Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AL502_RS02330 Genome accession   NZ_CP014111
Coordinates   306751..307380 (+) Length   209 a.a.
NCBI ID   WP_001524444.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_144     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 301751..312380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL502_RS02305 (AL502_02805) ycbZ 302140..303900 (-) 1761 WP_000156502.1 Lon protease family protein -
  AL502_RS02310 (AL502_02810) matP 304086..304538 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  AL502_RS02315 (AL502_02815) ompA 304615..305667 (-) 1053 WP_001346420.1 porin OmpA -
  AL502_RS02325 (AL502_02825) sulA 306023..306532 (-) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  AL502_RS02330 (AL502_02830) sxy/tfoX 306751..307380 (+) 630 WP_001524444.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AL502_RS02335 (AL502_02835) yccS 307343..309505 (-) 2163 WP_000875041.1 YccS family putative transporter -
  AL502_RS02340 (AL502_02840) yccF 309515..309961 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AL502_RS02345 (AL502_02845) helD 310084..312138 (+) 2055 WP_001295938.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24190.10 Da        Isoelectric Point: 9.0428

>NTDB_id=168376 AL502_RS02330 WP_001524444.1 306751..307380(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_144]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=168376 AL502_RS02330 WP_001524444.1 306751..307380(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_144]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment