Detailed information NTG0168376

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BHE76_RS19745
• Genome accession: NZ_CP017353
• Coordinates: 4227726..4228730 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain FA-HZ1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4222726..4233730

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BHE76_RS19715 (BHE76_19710)	fghA	4222818..4223669 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
BHE76_RS19720 (BHE76_19715)	ispF	4223740..4224213 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BHE76_RS19725 (BHE76_19720)	truD	4224210..4225277 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
BHE76_RS19730 (BHE76_19725)	surE	4225265..4226014 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
BHE76_RS19735 (BHE76_19730)	-	4226047..4226682 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BHE76_RS19740 (BHE76_19735)	-	4226728..4227621 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
BHE76_RS19745 (BHE76_19740)	rpoS	4227726..4228730 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
BHE76_RS19750 (BHE76_19745)	fdxA	4229157..4229480 (-)	324	WP_003092272.1	ferredoxin FdxA	-
BHE76_RS19755 (BHE76_19750)	mutS	4229547..4232126 (-)	2580	WP_079279453.1	DNA mismatch repair protein MutS	-
BHE76_RS19760 (BHE76_19755)	-	4232186..4233160 (-)	975	WP_023114620.1	tyrosine-type recombinase/integrase	-
BHE76_RS34270	-	4233170..4233442 (-)	273	WP_318528907.1	DUF4224 domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=168376 BHE76_RS19745 WP_003113871.1 4227726..4228730(+) (rpoS) [Pseudomonas aeruginosa strain FA-HZ1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=168376 BHE76_RS19745 WP_003113871.1 4227726..4228730(+) (rpoS) [Pseudomonas aeruginosa strain FA-HZ1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653