Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AL477_RS10210 Genome accession   NZ_CP014099
Coordinates   1811297..1811926 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella sonnei strain FDAARGOS_90     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1806297..1816926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL477_RS10195 (AL477_10235) helD 1806539..1808593 (-) 2055 WP_000420537.1 DNA helicase IV -
  AL477_RS10200 (AL477_10240) - 1808716..1809162 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AL477_RS10205 (AL477_10245) yccS 1809172..1811334 (+) 2163 WP_000875023.1 YccS family putative transporter -
  AL477_RS10210 (AL477_10250) sxy/tfoX 1811297..1811926 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AL477_RS10215 (AL477_10255) sulA 1812145..1812654 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AL477_RS10220 (AL477_10265) ompA 1813009..1814049 (+) 1041 WP_000750416.1 porin OmpA -
  AL477_RS10225 (AL477_10270) matP 1814125..1814577 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AL477_RS10230 (AL477_10275) - 1814763..1816523 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=168359 AL477_RS10210 WP_000839153.1 1811297..1811926(-) (sxy/tfoX) [Shigella sonnei strain FDAARGOS_90]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=168359 AL477_RS10210 WP_000839153.1 1811297..1811926(-) (sxy/tfoX) [Shigella sonnei strain FDAARGOS_90]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment