Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   AL552_RS22410 Genome accession   NZ_CP014095
Coordinates   1120819..1121916 (+) Length   365 a.a.
NCBI ID   WP_005397733.1    Uniprot ID   A0AA92R960
Organism   Vibrio diabolicus strain FDAARGOS_96     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1115819..1126916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL552_RS22380 (AL552_05270) - 1117150..1118485 (-) 1336 Protein_1008 MATE family efflux transporter -
  AL552_RS22385 (AL552_05275) - 1118606..1118920 (-) 315 WP_005373603.1 DUF496 family protein -
  AL552_RS22390 (AL552_05280) - 1119150..1119365 (+) 216 WP_192943761.1 hypothetical protein -
  AL552_RS22395 (AL552_05285) - 1119573..1120181 (+) 609 WP_264292932.1 YceH family protein -
  AL552_RS22400 (AL552_05290) - 1120178..1120498 (+) 321 WP_012842363.1 GIY-YIG nuclease family protein -
  AL552_RS22410 (AL552_05300) luxP 1120819..1121916 (+) 1098 WP_005397733.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  AL552_RS22415 (AL552_05305) luxQ 1121916..1124492 (+) 2577 WP_104970547.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  AL552_RS22420 (AL552_05310) - 1124793..1125248 (+) 456 WP_005397727.1 MarR family transcriptional regulator -
  AL552_RS22425 (AL552_05315) - 1125286..1126344 (+) 1059 WP_074190486.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41598.94 Da        Isoelectric Point: 4.9826

>NTDB_id=168351 AL552_RS22410 WP_005397733.1 1120819..1121916(+) (luxP) [Vibrio diabolicus strain FDAARGOS_96]
MKKALVFSLMSMATVAPIAQATQVLNGYWAYQEFLDQFPEQKQLTNALADAVRETPVPVERDKKRPLKISVVYPGQQISD
YWIRNIDAFEQRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEDHQPFLYVGFDHAEGSRELAVEFGKRFPKQSHYSVLYFSEGYISDIRGNTFINQVNRDNNFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGREDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=168351 AL552_RS22410 WP_005397733.1 1120819..1121916(+) (luxP) [Vibrio diabolicus strain FDAARGOS_96]
ATGAAAAAAGCGTTAGTATTCTCCCTGATGTCAATGGCCACTGTCGCGCCGATAGCGCAAGCCACTCAAGTCCTCAATGG
GTATTGGGCATATCAAGAATTTTTAGACCAGTTTCCAGAACAGAAGCAGTTAACGAATGCGTTGGCTGACGCCGTGCGAG
AGACTCCTGTTCCGGTTGAAAGAGACAAAAAGCGTCCGTTAAAAATTTCTGTGGTTTATCCAGGCCAACAGATTTCGGAT
TATTGGATTCGAAATATAGACGCATTTGAACAGCGTTTAGATAAACTCGATATCGACTATCAACTTAATCAAGTATTTAC
CCGTCCCAACGCAGATATTAAGCAACAAAGTTTGTCTTTAATGGAAGCGCTGAAGAGCAACTCCGATTATCTGATTTTTA
CTCTCGATACCACTAGGCATCGTAAGTTTGTCGAACACGTCTTAGACTCAAAGAAAACCAAGTTGATCTTACAAAATATC
ACTACACCGGTAAGAGATTGGGAGGATCACCAACCGTTCCTTTATGTTGGTTTTGATCATGCTGAAGGCAGCCGTGAGCT
TGCAGTGGAGTTTGGTAAGCGTTTTCCAAAACAGAGCCATTATAGTGTGCTCTACTTTTCAGAAGGATATATCAGCGATA
TCAGAGGTAATACCTTTATCAATCAAGTCAACCGTGATAACAACTTTGAACTACAATCTGCTTACTATACTAAAGCGACA
AAGCAGTCTGGGTATGAAGCAGCAAAAGCGAGTTTGGAAAAATACCCTGACGTCGATTTTATTTATGCGTGTTCTACAGA
TGTGGCGCTAGGGGCTGTTGATGCGCTGAAAGAATTAGGGCGTGAAGATGTCATGATCAACGGCTGGGGTGGCGGCTCTG
CAGAATTAGAAGCGCTTTCGAAAGGGGAGTTAGACGTTACTGTTATGCGTATGAACGATGATACTGGCATTGCAATGGCA
GAAGCGATTAAGTGGGATCTTGAAGGGAAACCCGTTCCAACCGTTTATTCTGGTGATTTTGAAGTCGTCACGAAATCTGA
TTCTCCAGAAAGAATTGAAGCATTAAGAAAACGCGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641

Multiple sequence alignment