Detailed information NTG0168333

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AL552_RS13305
• Genome accession: NZ_CP014094
• Coordinates: 2511999..2512988 (-)
• Length: 329 a.a.
• NCBI ID: WP_104969793.1
• Uniprot ID: -
• Organism: Vibrio diabolicus strain FDAARGOS_96
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2506999..2517988

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL552_RS13290 (AL552_21445)	recA	2507545..2508588 (-)	1044	WP_005393872.1	recombinase RecA	Machinery gene
AL552_RS13295 (AL552_21450)	pncC	2508789..2509270 (-)	482	Protein_2265	nicotinamide-nucleotide amidase	-
AL552_RS13300 (AL552_21455)	mutS	2509355..2511916 (+)	2562	WP_104969792.1	DNA mismatch repair protein MutS	-
AL552_RS13305 (AL552_21460)	rpoS	2511999..2512988 (-)	990	WP_104969793.1	RNA polymerase sigma factor RpoS	Regulator
AL552_RS13310 (AL552_21465)	-	2513069..2513992 (-)	924	WP_006743295.1	peptidoglycan DD-metalloendopeptidase family protein	-
AL552_RS13315 (AL552_21470)	-	2514007..2514633 (-)	627	WP_005393881.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AL552_RS13320 (AL552_21475)	surE	2514633..2515409 (-)	777	WP_005393882.1	5'/3'-nucleotidase SurE	-
AL552_RS13325 (AL552_21480)	truD	2515409..2516452 (-)	1044	WP_104969794.1	tRNA pseudouridine(13) synthase TruD	-
AL552_RS13330 (AL552_21485)	ispF	2516499..2516975 (-)	477	WP_005393886.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AL552_RS13335 (AL552_21490)	ispD	2516993..2517697 (-)	705	WP_104969795.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AL552_RS13340 (AL552_21495)	ftsB	2517699..2517980 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37471.38 Da
• Isoelectric Point: 4.7299

>NTDB_id=168333 AL552_RS13305 WP_104969793.1 2511999..2512988(-) (rpoS) [Vibrio diabolicus strain FDAARGOS_96]
MSISNTVTKVEEFAFDNASVKTIDNELEKSSSTTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSSYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=168333 AL552_RS13305 WP_104969793.1 2511999..2512988(-) (rpoS) [Vibrio diabolicus strain FDAARGOS_96]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAAATCATCATCCACAACCGAAAGCAAAACGGCTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGACGCAA
CTCAGTTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCCGAAGAAGAAGTGCTTTATGCTCGACGAGCCCTG
CGTGGCGACGAAGCGGCACGTAAACGTATGATCGAAAGTAACCTACGTTTGGTGGTCAAGATCTCTCGTCGATATAGTAA
TCGCGGCCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTTGGTTTGATCCGTGCGGTCGAGAAGTTCGATCCAGAGC
GTGGTTTCCGCTTCTCTAGTTATGCGACCTGGTGGATCCGACAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACG
ATCCGTCTACCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCA
CGAACCTACCGCAGAAGAAATTGCTGCTCAGTTAGATATTCCAGTCGAAGATGTAAGCAAAATGCTACGTCTCAATGAGC
GTATCAGTTCTGTCGACACACCAATCGGTGGTGACGGTGAAAAAGCGCTGTTGGATATTATTCCCGACGCAAACAACTCC
GATCCAGAAGTCTCGACTCAAGATGACGATATCAAATCATCGCTGATTCATTGGTTAGAAGAGTTGAATCCAAAACAGAA
AGAAGTACTTGCACGACGTTTTGGTCTTCTAGGCTATGAGCCTTCGACGCTTGAAGAAGTTGGTCGAGAGATTGGTCTGA
CACGTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATG
GAAAACTTATTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (170-243)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.934	100	0.842