Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AL552_RS10985 Genome accession   NZ_CP014094
Coordinates   2024817..2026223 (-) Length   468 a.a.
NCBI ID   WP_192943648.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_96     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2019817..2031223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL552_RS10950 (AL552_19105) moaE 2020343..2020798 (-) 456 WP_048625774.1 molybdopterin synthase catalytic subunit MoaE -
  AL552_RS10955 (AL552_19110) moaD 2020800..2021057 (-) 258 WP_053808842.1 molybdopterin synthase sulfur carrier subunit -
  AL552_RS10960 (AL552_19115) moaC 2021054..2021533 (-) 480 WP_005396647.1 cyclic pyranopterin monophosphate synthase MoaC -
  AL552_RS10965 (AL552_19120) moaB 2021560..2022072 (-) 513 WP_005396648.1 molybdenum cofactor biosynthesis protein B -
  AL552_RS10970 (AL552_19125) moaA 2022181..2023170 (-) 990 WP_005396649.1 GTP 3',8-cyclase MoaA -
  AL552_RS10975 (AL552_19130) - 2023466..2024362 (+) 897 WP_006742807.1 YvcK family protein -
  AL552_RS10980 (AL552_19135) luxU 2024476..2024820 (-) 345 WP_012841577.1 quorum-sensing phosphorelay protein LuxU -
  AL552_RS10985 (AL552_19140) luxO 2024817..2026223 (-) 1407 WP_192943648.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AL552_RS10990 (AL552_19145) uvrB 2026517..2028547 (-) 2031 WP_104969650.1 excinuclease ABC subunit UvrB -
  AL552_RS11000 (AL552_19155) rsxA 2029512..2030090 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  AL552_RS11005 (AL552_19160) rsxB 2030094..2030690 (+) 597 WP_005396655.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52146.73 Da        Isoelectric Point: 6.2543

>NTDB_id=168323 AL552_RS10985 WP_192943648.1 2024817..2026223(-) (luxO) [Vibrio diabolicus strain FDAARGOS_96]
MQQKSEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCVEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAPDVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVAKFIEPKVMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=168323 AL552_RS10985 WP_192943648.1 2024817..2026223(-) (luxO) [Vibrio diabolicus strain FDAARGOS_96]
ATGCAACAAAAATCTGAAGGTCCTAAATCTCGTTACCTTTTAATGGTTGAGGATACCGCATCTGTTGCGGCACTGTACCG
CTCATACCTGACACCGCTTGGTATAGATATCAATATTGTCGGTACAGGTAGGGATGCCATTGAAAGTCTCAACCATAGAA
TTCCAGATCTTATTCTGCTCGATCTTCGTCTTCCAGATATGACGGGGATGGACGTTTTACACGCTGTAAAAAAGAGTCAT
CCAGACGTACCTATTATTTTTATGACCGCTCACGGTTCTATCGATACCGCGGTAGAAGCAATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCTGACCGCTTACGTGTCACGGTTAACAATGCGATTCGTAAAGCGACTAAGTTAAAAA
ACGAGGCTGATAACCCGGGTAATCAAAGTTATCAAGGCTTTATTGGCAGCAGCCAAACTATGCAACAGGTCTACCGTACG
ATTGATTCAGCAGCGAGCAGTAAAGCGAGCATCTTCATCACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGTCGAGGC
AATCCATGCGGCAAGCAAGCGTGGTGACAAGCCTTTTATTGCGATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTGAAAGGTGCTTTTACCGGCGCAGCAAATGATCGTCAGGGTGCAGCGGAATTAGCGGATGGT
GGCACACTTTTCCTTGATGAACTGTGTGAGATGGACTTAGATTTGCAAACCAAATTGCTGCGATTTATTCAAACTGGCAC
GTTCCAAAAAGTGGGCTCATCAAAAATGAAGAGCGTGGATGTTCGCTTTGTTTGTGCAACTAACCGTGACCCATGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTGCCACCTTTACGTGAA
CGAGGTGAAGATGTCATTGAAATTGCATATTCACTGTTAGGCTATATGTCGCACGAAGAAGGAAAAAGCTTCGTACGTTT
TGCGCCTGATGTAATCGACCGATTTAATAGCTATGAGTGGCCTGGCAACGTTCGTCAGCTACAAAACGTGCTGCGCAATA
TCGTTGTTCTAAACAACGGTAAAGAAATCACGTTGGATATGTTACCGCCACCGCTGAATCAACCGCTTGACCGTCCGTCT
TCTGTGGCGAAATTCATTGAGCCGAAAGTGATGACTGCGTCTGAGATTATGCCGTTGTGGATGACAGAAAAAATGGCGAT
AGAGCAAGCGATTGAAGCGTGTGATGGCAATATCCCCCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCTTGGAATGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.86

95.94

0.833

Multiple sequence alignment