Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AL552_RS06580 Genome accession   NZ_CP014094
Coordinates   1217858..1219279 (-) Length   473 a.a.
NCBI ID   WP_005397785.1    Uniprot ID   A0AAE4M4S2
Organism   Vibrio diabolicus strain FDAARGOS_96     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1212858..1224279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL552_RS06555 (AL552_14715) - 1213376..1214026 (+) 651 WP_104969334.1 thiopurine S-methyltransferase -
  AL552_RS06560 (AL552_14720) purT 1214097..1215272 (-) 1176 WP_104969335.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  AL552_RS06565 (AL552_14725) cdd 1215418..1216305 (-) 888 WP_005397788.1 cytidine deaminase -
  AL552_RS06570 (AL552_14730) - 1216749..1217426 (-) 678 WP_104969336.1 LrgB family protein -
  AL552_RS06575 (AL552_14735) - 1217428..1217802 (-) 375 WP_005397786.1 CidA/LrgA family protein -
  AL552_RS06580 (AL552_14740) sbcB 1217858..1219279 (-) 1422 WP_005397785.1 exodeoxyribonuclease I Machinery gene
  AL552_RS06585 (AL552_14745) - 1219436..1220809 (-) 1374 WP_054867346.1 L-cystine transporter -
  AL552_RS06590 (AL552_14750) - 1221011..1221700 (-) 690 WP_104969337.1 NAD(P)H-binding protein -
  AL552_RS06595 (AL552_14755) cobT 1221949..1222992 (+) 1044 WP_104969338.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  AL552_RS06600 (AL552_14760) - 1222992..1223798 (+) 807 WP_104969339.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54416.63 Da        Isoelectric Point: 4.8658

>NTDB_id=168321 AL552_RS06580 WP_005397785.1 1217858..1219279(-) (sbcB) [Vibrio diabolicus strain FDAARGOS_96]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=168321 AL552_RS06580 WP_005397785.1 1217858..1219279(-) (sbcB) [Vibrio diabolicus strain FDAARGOS_96]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACAAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTCAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCCGCACTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCT
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAAACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACACGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGTTGGG
ATTTACTCGATGTATTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAGTGGCCAGAAAACGAAGATGGCTTCACT
AGTTTTAAATTAGAGCACTTGTCTGTTGCTAACGGCATAGAACATAGTAACGCGCACGATGCGATGGCAGACGTGATTGC
GACTATCGAAATGGCGAAAAAAGTCAAAGCAGCGCAACCAAAATTGTTTGACTACTTCTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGAATTAGTCGACATCGTCAACATGACGCCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAT
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAACAACGCTGTTATCACTATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTACACGAAAGACTCTACACTAAGCGAGAAGATCTTGGTGAATTGCTACCGG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCAGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGTTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACGCAACTTTACGACGGATTCTTCTCTCCGGCCG
ATCGCGCAGCCATGGATATCATTCGAGAAACCGACCCGAACAATCTTGCCGCATTGGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAGAGACGCTGGGCATT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799

Multiple sequence alignment