Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BSBS38_RS18860 Genome accession   NZ_CP017314
Coordinates   3554838..3555971 (-) Length   377 a.a.
NCBI ID   WP_015251020.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS38     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3549838..3560971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSBS38_RS18825 (BSBS38_03794) ywnA 3549968..3550369 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  BSBS38_RS18830 (BSBS38_03795) ureC 3550504..3552213 (-) 1710 WP_014481168.1 urease subunit alpha -
  BSBS38_RS18835 (BSBS38_03796) ureB 3552210..3552584 (-) 375 WP_015251023.1 urease subunit beta -
  BSBS38_RS18840 (BSBS38_03797) ureA 3552581..3552898 (-) 318 WP_046160948.1 urease subunit gamma -
  BSBS38_RS22215 - 3553093..3553251 (-) 159 WP_120363539.1 hypothetical protein -
  BSBS38_RS22645 - 3553518..3553730 (-) 213 Protein_3654 urea ABC transporter substrate-binding protein -
  BSBS38_RS18850 (BSBS38_03798) csbD 3553943..3554131 (-) 189 WP_003227718.1 stress response protein CsbD -
  BSBS38_RS18855 (BSBS38_03799) - 3554204..3554683 (-) 480 WP_003244390.1 hypothetical protein -
  BSBS38_RS18860 (BSBS38_03800) rapC 3554838..3555971 (-) 1134 WP_015251020.1 response regulator aspartate phosphatase RapB Regulator
  BSBS38_RS18865 (BSBS38_03801) moaA 3556163..3557188 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  BSBS38_RS18870 (BSBS38_03802) fdhD 3557204..3557992 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  BSBS38_RS18875 (BSBS38_03803) - 3558225..3558386 (-) 162 WP_003227706.1 hypothetical protein -
  BSBS38_RS18880 (BSBS38_03804) ywmD 3558481..3559155 (-) 675 WP_041334709.1 vWA domain-containing protein -
  BSBS38_RS22080 - 3559208..3559348 (-) 141 WP_014481180.1 hypothetical protein -
  BSBS38_RS18890 (BSBS38_03805) ywmC 3559479..3560162 (-) 684 WP_041334706.1 vWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45038.16 Da        Isoelectric Point: 4.7546

>NTDB_id=168295 BSBS38_RS18860 WP_015251020.1 3554838..3555971(-) (rapC) [Bacillus subtilis strain BS38]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=168295 BSBS38_RS18860 WP_015251020.1 3554838..3555971(-) (rapC) [Bacillus subtilis strain BS38]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAACATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424

Multiple sequence alignment