Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BSBS38_RS13190 Genome accession   NZ_CP017314
Coordinates   2456917..2458044 (-) Length   375 a.a.
NCBI ID   WP_014480328.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS38     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2451917..2463044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSBS38_RS22415 - 2451965..2452177 (-) 213 Protein_2539 recombinase family protein -
  BSBS38_RS13175 (BSBS38_02653) fumC 2452396..2453784 (-) 1389 WP_014480325.1 class II fumarate hydratase -
  BSBS38_RS13180 (BSBS38_02654) - 2453951..2454841 (+) 891 WP_014480326.1 LysR family transcriptional regulator -
  BSBS38_RS13185 (BSBS38_02655) - 2455782..2456177 (+) 396 WP_046160622.1 VOC family protein -
  BSBS38_RS13190 (BSBS38_02657) rapC 2456917..2458044 (-) 1128 WP_014480328.1 Rap family tetratricopeptide repeat protein Regulator
  BSBS38_RS22705 - 2458226..2459059 (+) 834 Protein_2544 ribonuclease YeeF family protein -
  BSBS38_RS22710 (BSBS38_02660) - 2459445..2460152 (+) 708 WP_014480330.1 hypothetical protein -
  BSBS38_RS13205 (BSBS38_02661) - 2460166..2460453 (+) 288 WP_014480331.1 hypothetical protein -
  BSBS38_RS13210 (BSBS38_02662) - 2460856..2461296 (+) 441 WP_014480332.1 SMI1/KNR4 family protein -
  BSBS38_RS22565 (BSBS38_02663) - 2461395..2461622 (+) 228 WP_250637576.1 SMI1/KNR4 family protein -
  BSBS38_RS22570 - 2461636..2461848 (+) 213 WP_268284630.1 SMI1/KNR4 family protein -
  BSBS38_RS13220 (BSBS38_02664) cdiI 2461945..2462304 (+) 360 WP_014480334.1 ribonuclease toxin immunity protein CdiI -
  BSBS38_RS13225 (BSBS38_02665) - 2462409..2462888 (+) 480 WP_224588637.1 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44149.36 Da        Isoelectric Point: 6.0289

>NTDB_id=168260 BSBS38_RS13190 WP_014480328.1 2456917..2458044(-) (rapC) [Bacillus subtilis strain BS38]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLNALYVDAVDQQGVNKTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=168260 BSBS38_RS13190 WP_014480328.1 2456917..2458044(-) (rapC) [Bacillus subtilis strain BS38]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACGACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCGTTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAATGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATAAAACCATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(195-251)

Tetratricopeptide repeat (TPR_8)

(259-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

100

0.445
  rapF Bacillus subtilis subsp. subtilis str. 168

39.418

100

0.397

Multiple sequence alignment