Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   BSBS38_RS11630 Genome accession   NZ_CP017314
Coordinates   2190416..2191906 (-) Length   496 a.a.
NCBI ID   WP_014480148.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2185416..2196906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSBS38_RS11600 (BSBS38_02337) gudB 2185571..2186845 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  BSBS38_RS11605 (BSBS38_02338) mecB 2187001..2187585 (-) 585 WP_003230533.1 genetic competence negative regulator -
  BSBS38_RS11610 (BSBS38_02339) ypbG 2187744..2188523 (-) 780 WP_014480146.1 metallophosphoesterase -
  BSBS38_RS11615 (BSBS38_02340) ypbF 2188609..2189052 (-) 444 WP_014480147.1 YpbF family protein -
  BSBS38_RS11620 claE 2189115..2189836 (-) 722 Protein_2233 LysM peptidoglycan-binding domain-containing protein -
  BSBS38_RS11625 (BSBS38_02342) ypbD 2189787..2190389 (-) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  BSBS38_RS11630 (BSBS38_02343) recS 2190416..2191906 (-) 1491 WP_014480148.1 RecQ family ATP-dependent DNA helicase Machinery gene
  BSBS38_RS11635 (BSBS38_02344) gmmB 2191899..2192957 (-) 1059 WP_014480149.1 helix-turn-helix domain-containing protein -
  BSBS38_RS11640 (BSBS38_02345) fdxA 2193223..2193471 (+) 249 WP_003225461.1 ferredoxin -
  BSBS38_RS11645 (BSBS38_02346) fmnP 2193511..2194083 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  BSBS38_RS11650 (BSBS38_02347) serA 2194580..2196157 (+) 1578 WP_046160519.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56464.09 Da        Isoelectric Point: 6.5562

>NTDB_id=168241 BSBS38_RS11630 WP_014480148.1 2190416..2191906(-) (recS) [Bacillus subtilis strain BS38]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAVDTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYELKGARSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=168241 BSBS38_RS11630 WP_014480148.1 2190416..2191906(-) (recS) [Bacillus subtilis strain BS38]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGTGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CCGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGTGATGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTCCTAGAAAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGGAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTCGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACTAAAAGGGGCACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992