Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AL532_RS27410 Genome accession   NZ_CP014062
Coordinates   5722005..5722640 (-) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas monteilii strain FDAARGOS_171     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5717005..5727640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL532_RS27380 (AL532_27380) murB 5718102..5719121 (-) 1020 WP_060498749.1 UDP-N-acetylmuramate dehydrogenase -
  AL532_RS27385 (AL532_27385) - 5719118..5719582 (-) 465 WP_104835338.1 low molecular weight protein-tyrosine-phosphatase -
  AL532_RS27390 (AL532_27390) kdsB 5719582..5720346 (-) 765 WP_060498747.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AL532_RS27395 (AL532_27395) - 5720343..5720528 (-) 186 WP_003247142.1 Trm112 family protein -
  AL532_RS27400 (AL532_27400) lpxK 5720573..5721574 (-) 1002 WP_104835339.1 tetraacyldisaccharide 4'-kinase -
  AL532_RS27405 (AL532_27405) - 5721574..5722008 (-) 435 WP_104835340.1 biopolymer transporter ExbD -
  AL532_RS27410 (AL532_27410) exbB 5722005..5722640 (-) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AL532_RS27415 (AL532_27415) comA 5723029..5725242 (-) 2214 WP_104835341.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AL532_RS27420 (AL532_27420) - 5725385..5725891 (+) 507 Protein_5290 DUF2062 domain-containing protein -
  AL532_RS27425 (AL532_27425) - 5725901..5726680 (-) 780 WP_060498742.1 ABC transporter permease -
  AL532_RS27430 (AL532_27430) - 5726677..5727609 (-) 933 WP_016715124.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=168218 AL532_RS27410 WP_016391244.1 5722005..5722640(-) (exbB) [Pseudomonas monteilii strain FDAARGOS_171]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=168218 AL532_RS27410 WP_016391244.1 5722005..5722640(-) (exbB) [Pseudomonas monteilii strain FDAARGOS_171]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGGGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAAATCCTCGCCGCTGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAACTGGAGCGCTACAT
CAGCACCCTCGGCACCATTGCCGCCATGGCCCCGCTGTTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCTCGCAGATGACCGCCAACGCGGCCGTACTGGCCGGGGGGATCTCCAAGGCCCTGGTGACCACCGCT
GCAGGCCTGATGGTCGGTATCCCGGCCGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment