Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AL504_RS18530 Genome accession   NZ_CP014060
Coordinates   4066937..4068382 (-) Length   481 a.a.
NCBI ID   WP_061072769.1    Uniprot ID   A0A0X8P0U8
Organism   Achromobacter xylosoxidans strain FDAARGOS_147     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4061937..4073382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL504_RS18495 (AL504_18350) - 4062295..4062996 (+) 702 WP_192579531.1 hypothetical protein -
  AL504_RS18500 (AL504_18355) bfr 4063084..4063560 (-) 477 WP_006386993.1 bacterioferritin -
  AL504_RS18505 (AL504_18360) - 4063891..4064805 (-) 915 WP_061072766.1 DMT family transporter -
  AL504_RS18510 (AL504_18365) - 4064918..4065838 (+) 921 WP_061072767.1 LysR substrate-binding domain-containing protein -
  AL504_RS18515 (AL504_18370) - 4065808..4066107 (-) 300 WP_104021657.1 (2Fe-2S)-binding protein -
  AL504_RS18520 (AL504_31635) - 4066162..4066563 (-) 402 WP_225856517.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AL504_RS18525 (AL504_18375) - 4066636..4066842 (-) 207 WP_061072768.1 hypothetical protein -
  AL504_RS18530 (AL504_18380) rpoN/rpoN1 4066937..4068382 (-) 1446 WP_061072769.1 RNA polymerase factor sigma-54 Machinery gene
  AL504_RS18535 (AL504_18385) - 4068381..4069028 (+) 648 WP_035359844.1 hypothetical protein -
  AL504_RS18540 (AL504_18390) - 4069225..4070202 (+) 978 WP_061072770.1 tripartite tricarboxylate transporter substrate binding protein -
  AL504_RS18545 (AL504_18395) leuA 4070611..4072320 (+) 1710 WP_061072771.1 2-isopropylmalate synthase -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52516.89 Da        Isoelectric Point: 4.8032

>NTDB_id=168187 AL504_RS18530 WP_061072769.1 4066937..4068382(-) (rpoN/rpoN1) [Achromobacter xylosoxidans strain FDAARGOS_147]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLDLEAEISQVLADNPLLERDDEPSSAETQAESERESSVQDDEP
APERETPVDEMPGSGGVYPDDDSSLPEAARPDTLREHLLGQLVLTRAAPRDAALAALLIDELDENGYLGSPLEEILSWLP
AEMEPDLDELRAALSLLQSFDPAGIGARDMSDCLLLQLRNPDLTRLPEAADPKALACARLICGQHLALLATGNNARLCAA
VGCDEATLRAAHALILRLEPRPGRAWTVPAADYAVPDVIVRKTRRGWQVTLNSAAVPRLQINGLYAQMLGNQKESAHAGL
QAQLQQAKWMIRNVEQRFDTILRVAQAIVDRQTAFFSQGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGAGVSTDGGDATSATAVQTFIRQMVAEENRAKPLSDSQIMEKLADQGIVIARRTVAKYREALRIAPAALRKAQAVA
R

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=168187 AL504_RS18530 WP_061072769.1 4066937..4068382(-) (rpoN/rpoN1) [Achromobacter xylosoxidans strain FDAARGOS_147]
ATGCAAAATATTGTACCTATGACCCGTCCTATTTTAGAACTGCGGCCCGGTCAGCATCTGACGCTGACCCCTCAACTGCA
GCAATCCATCCGGTTGCTGCAGCTGTCCACGCTCGACCTCGAGGCGGAAATCTCGCAGGTGCTCGCCGACAATCCGTTGT
TGGAACGCGACGATGAGCCGTCGTCCGCCGAGACCCAGGCGGAATCCGAGCGCGAATCGTCGGTGCAGGACGACGAGCCG
GCGCCCGAACGCGAGACCCCGGTGGACGAAATGCCGGGTTCGGGCGGGGTCTATCCCGACGACGATTCCAGCCTGCCCGA
AGCGGCCCGCCCCGACACCCTGCGCGAGCACCTGCTGGGCCAGCTGGTGCTGACGCGCGCGGCGCCGCGCGATGCCGCGC
TGGCGGCGCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGGGTCGCCGCTGGAGGAGATCCTGAGCTGGCTGCCC
GCCGAGATGGAGCCGGACCTGGATGAACTGCGCGCGGCGCTGTCGCTGCTGCAGTCGTTCGATCCGGCCGGCATCGGCGC
CCGCGACATGTCCGATTGCCTGTTGTTGCAACTGCGCAACCCGGACCTGACGCGCCTGCCCGAAGCCGCCGATCCCAAGG
CGCTGGCCTGCGCCCGTCTGATCTGCGGCCAGCACCTGGCGTTGCTGGCCACCGGCAACAACGCCCGCCTGTGCGCGGCG
GTCGGCTGTGACGAGGCGACCCTGCGCGCCGCCCATGCCCTGATCCTGCGCCTGGAGCCGCGTCCTGGCCGCGCCTGGAC
GGTGCCGGCGGCCGATTACGCCGTGCCCGACGTGATCGTGCGCAAGACGCGCCGCGGCTGGCAGGTGACGCTCAACAGCG
CCGCCGTGCCGCGCCTGCAGATCAACGGCCTGTACGCGCAGATGCTGGGCAACCAGAAGGAATCGGCCCATGCCGGCCTG
CAGGCGCAACTGCAGCAGGCCAAGTGGATGATCCGCAACGTCGAGCAGCGCTTCGACACCATCCTGCGGGTGGCCCAGGC
CATCGTCGACCGCCAGACCGCCTTCTTCAGCCAGGGGCCGGCGGCCATGCGGCCGCTCATCCTGAAAGACATCGCGGGCG
AGCTGGGCTTGCACGAATCGACCATTTCACGGGCCACGACACAGAAGTACATGCTCACTCCGTTTGGCACGCTGGAGCTC
AAGCGCTTCTTCGGGGCGGGGGTGTCGACGGACGGCGGCGACGCCACCTCGGCCACGGCGGTGCAGACCTTCATCCGCCA
GATGGTGGCCGAGGAGAACCGGGCCAAGCCACTATCGGACAGCCAGATCATGGAAAAGCTGGCCGACCAGGGCATCGTCA
TCGCCCGCCGCACGGTCGCGAAATACCGCGAAGCACTGCGGATCGCGCCCGCCGCGCTACGCAAGGCGCAGGCCGTGGCG
CGCTGA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(108-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.708

100

0.509

Multiple sequence alignment