Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   BSBS38_RS02430 Genome accession   NZ_CP017314
Coordinates   473915..474349 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain BS38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 468915..479349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSBS38_RS02400 (BSBS38_00483) ydaD 469563..470423 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  BSBS38_RS02405 (BSBS38_00484) lyxE 470439..470941 (+) 503 Protein_425 D-lyxose ketol-isomerase -
  BSBS38_RS02410 (BSBS38_00485) ydaF 471029..471580 (+) 552 WP_014478866.1 GNAT family N-acetyltransferase -
  BSBS38_RS02415 (BSBS38_00486) ydaG 471658..472080 (+) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  BSBS38_RS02420 (BSBS38_00487) amj 472586..473395 (+) 810 WP_014478868.1 lipid II flippase Amj -
  BSBS38_RS02425 (BSBS38_00488) ydzA 473440..473730 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  BSBS38_RS02430 (BSBS38_00489) lrpC 473915..474349 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  BSBS38_RS02435 (BSBS38_00490) topB 474414..476597 (+) 2184 WP_014478870.1 DNA topoisomerase III -
  BSBS38_RS02440 (BSBS38_00491) ephJ 476801..477889 (+) 1089 WP_041351794.1 hypothetical protein -
  BSBS38_RS02445 epsK 477870..478721 (+) 852 Protein_433 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=168180 BSBS38_RS02430 WP_003246585.1 473915..474349(+) (lrpC) [Bacillus subtilis strain BS38]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=168180 BSBS38_RS02430 WP_003246585.1 473915..474349(+) (lrpC) [Bacillus subtilis strain BS38]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1