Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AL494_RS11495 Genome accession   NZ_CP014057
Coordinates   2331681..2333051 (-) Length   456 a.a.
NCBI ID   WP_048787668.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain FDAARGOS_137     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2326681..2338051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL494_RS11480 (AL494_11360) cysE 2327702..2328343 (-) 642 WP_047502426.1 serine O-acetyltransferase -
  AL494_RS11485 (AL494_11365) gltX 2328690..2330144 (-) 1455 WP_048787669.1 glutamate--tRNA ligase -
  AL494_RS11490 (AL494_11370) - 2330561..2331619 (-) 1059 WP_047502391.1 PIN/TRAM domain-containing protein -
  AL494_RS11495 (AL494_11375) radA 2331681..2333051 (-) 1371 WP_048787668.1 DNA repair protein RadA Machinery gene
  AL494_RS11500 (AL494_11380) - 2333400..2335862 (-) 2463 WP_048787667.1 ATP-dependent Clp protease ATP-binding subunit -
  AL494_RS11505 (AL494_11385) - 2335874..2336884 (-) 1011 WP_048787666.1 protein arginine kinase -
  AL494_RS11510 (AL494_11390) - 2336877..2337428 (-) 552 WP_011303853.1 UvrB/UvrC motif-containing protein -
  AL494_RS11515 (AL494_11395) - 2337445..2337906 (-) 462 WP_002484181.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50364.92 Da        Isoelectric Point: 7.4849

>NTDB_id=168177 AL494_RS11495 WP_048787668.1 2331681..2333051(-) (radA) [Staphylococcus saprophyticus strain FDAARGOS_137]
MAKKKVIFECMACGYQSPKWMGKCPNCGGWNQMEEIVEQKAASPKHGVRSRDNVSRVQKLNEIKHETTPRVKTNSNEFNR
VLGGGIVNGSLVLIGGDPGIGKSTLLLQICASLSQSKNVLYITGEESLSQTKLRAERLDEDSSELNVFAETDLEVIHETV
KQIKPDLLVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQTGLKGVKNPSEMFLEERSANVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIIIATASSFKDLTVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAEKLGFKRVIIPESNIGGWQFPEGIKVIGVKSVHEALKYALTKH

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=168177 AL494_RS11495 WP_048787668.1 2331681..2333051(-) (radA) [Staphylococcus saprophyticus strain FDAARGOS_137]
TTGGCTAAAAAGAAAGTGATTTTTGAATGTATGGCATGTGGTTATCAGTCACCGAAATGGATGGGGAAATGCCCAAACTG
TGGTGGTTGGAATCAAATGGAAGAAATTGTCGAACAAAAGGCAGCCAGTCCAAAACATGGCGTACGCAGTCGAGACAATG
TATCTAGAGTACAAAAATTAAATGAAATTAAACATGAAACAACACCTAGGGTTAAAACAAATTCAAACGAATTTAACCGC
GTACTAGGTGGAGGTATTGTTAATGGTTCACTTGTCTTAATTGGTGGTGATCCTGGTATTGGGAAATCGACATTACTATT
ACAAATTTGTGCATCATTATCCCAATCTAAAAACGTATTATATATCACTGGTGAAGAATCATTGAGTCAAACGAAATTAA
GAGCGGAAAGATTAGATGAAGATTCTAGTGAATTAAATGTATTTGCCGAAACAGATTTAGAAGTAATCCATGAAACGGTT
AAACAAATTAAACCAGATTTACTTGTTGTGGATTCTATACAAACAATATTCCACCCTGAAATCAGCTCGGCACCAGGCTC
GGTGTCACAAGTTAGAGAAAGTACGCAGAGCTTAATGAATATAGCTAAACAGATGAATATTGCGACGTTTATTGTCGGAC
ATGTAACAAAAGAAGGTCAAATCGCTGGGCCGCGTTTACTTGAACATATGGTGGACACAGTGCTTTACTTCGAAGGTGAT
GAACACCACGCATATCGTATTTTAAGAGCTGTGAAAAACCGTTTTGGTTCTACAAATGAAATGGGTATCTTTGAGATGAA
GCAAACAGGTTTGAAAGGCGTTAAAAACCCTTCGGAAATGTTTCTTGAAGAACGTTCAGCCAATGTACCAGGTTCCACGA
TTGTTTCTACCATGGAAGGTACGAGACCTTTATTGATTGAAGTACAAGCATTAGTGACACCGACAACTTTTAATAATCCG
AGACGTATGGCAACGGGCATAGATCATAATCGATTGAGTTTGCTCATGGCCGTATTAGAAAAGAAAGAAAATTATCTCCT
TCAGCAGCAAGATGCTTATATCAAAGTTGCGGGTGGTGTGAGACTTACTGAGCCAGCAGTAGATTTAGGTATCATTATTG
CGACGGCTTCAAGCTTTAAAGATTTAACGGTGGACGGCTTGGACTGTTTCATCGGTGAGGTAGGTCTTACTGGAGAAGTC
AGACGTGTTTCTCGAATAGAACAACGTGTCCAAGAAGCTGAAAAATTAGGGTTCAAACGTGTGATTATCCCTGAGTCCAA
TATTGGGGGATGGCAATTTCCTGAAGGTATAAAAGTAATTGGGGTTAAAAGTGTTCATGAAGCTTTAAAATACGCATTAA
CAAAACATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-219)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.083

100

0.662
  radA Streptococcus pneumoniae Rx1

59.778

98.684

0.59
  radA Streptococcus pneumoniae D39

59.778

98.684

0.59
  radA Streptococcus pneumoniae R6

59.778

98.684

0.59
  radA Streptococcus pneumoniae TIGR4

59.778

98.684

0.59
  radA Streptococcus mitis NCTC 12261

59.778

98.684

0.59
  radA Streptococcus mitis SK321

59.778

98.684

0.59

Multiple sequence alignment