Detailed information NTG0168169

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BSBS38_RS01655
• Genome accession: NZ_CP017314
• Coordinates: 299290..300411 (+)
• Length: 373 a.a.
• NCBI ID: WP_069963964.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain BS38
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 294290..305411

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSBS38_RS01635	ycdA	294295..295313 (-)	1019	Protein_272	DUF4352 domain-containing protein	-
BSBS38_RS21830	-	295382..295513 (-)	132	WP_003246334.1	hypothetical protein	-
BSBS38_RS01640 (BSBS38_00325)	ycdB	295687..297108 (+)	1422	WP_069963963.1	YcdB/YcdC domain-containing protein	-
BSBS38_RS01645 (BSBS38_00326)	ycdC	297295..298656 (+)	1362	WP_069964450.1	YcdB/YcdC domain-containing protein	-
BSBS38_RS01650 (BSBS38_00327)	cwlK	298664..299167 (-)	504	WP_041352228.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
BSBS38_RS01655 (BSBS38_00328)	rapF	299290..300411 (+)	1122	WP_069963964.1	response regulator aspartate phosphatase RapJ	Regulator
BSBS38_RS01660 (BSBS38_00329)	ycdF	300519..301295 (+)	777	WP_041352232.1	SDR family oxidoreductase	-
BSBS38_RS01665 (BSBS38_00330)	ycdG	301320..303005 (+)	1686	WP_069963965.1	glycoside hydrolase family 13 protein	-
BSBS38_RS01670 (BSBS38_00331)	znuA	303192..304151 (+)	960	WP_003234733.1	metal ABC transporter substrate-binding protein	-
BSBS38_RS01675 (BSBS38_00332)	znuC	304206..304901 (+)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44407.28 Da
• Isoelectric Point: 4.7838

>NTDB_id=168169 BSBS38_RS01655 WP_069963964.1 299290..300411(+) (rapF) [Bacillus subtilis strain BS38]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
DYFKTAAAIFEEHNFQQAVQAFFSLTHIYCKEGKYDKAAETYGLGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=168169 BSBS38_RS01655 WP_069963964.1 299290..300411(+) (rapF) [Bacillus subtilis strain BS38]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTATTGGAATACTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATCGACCATTATAAACATGCCGAGGAGAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCGTACATGATCGCCGCTGCCTATTATAATGTCGGCCACTGTAAATACAGTCTTGGCGATTACAAGGAAGCGGAG
GACTATTTCAAAACAGCGGCCGCTATTTTTGAGGAGCACAACTTTCAGCAAGCCGTTCAAGCTTTTTTTTCACTGACCCA
TATCTACTGTAAAGAAGGAAAATACGACAAAGCGGCAGAGACGTATGGCCTCGGGATAAAGAGTGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAGCGGCGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCCGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTATCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (219-282)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405