Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   AL494_RS04260 Genome accession   NZ_CP014057
Coordinates   893670..894386 (-) Length   238 a.a.
NCBI ID   WP_048787268.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain FDAARGOS_137     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 888670..899386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL494_RS04240 (AL494_04205) - 889735..889959 (+) 225 WP_002482777.1 sulfurtransferase TusA family protein -
  AL494_RS04245 (AL494_04210) - 890105..891058 (+) 954 WP_011302725.1 LacI family DNA-binding transcriptional regulator -
  AL494_RS04250 (AL494_04215) - 891144..892628 (+) 1485 WP_011302726.1 sucrose-6-phosphate hydrolase -
  AL494_RS04255 (AL494_04220) - 892625..893593 (+) 969 WP_048787269.1 carbohydrate kinase family protein -
  AL494_RS04260 (AL494_04225) agrA 893670..894386 (-) 717 WP_048787268.1 quorum-sensing response regulator AgrA Regulator
  AL494_RS04265 (AL494_04230) agrC 894399..895694 (-) 1296 WP_011302728.1 quorum-sensing sensor histidine kinase AgrC -
  AL494_RS04270 (AL494_04235) agrD 895720..895881 (-) 162 WP_002482783.1 cyclic lactone autoinducer peptide AgrD -
  AL494_RS04275 (AL494_04240) - 895884..896453 (-) 570 WP_011302729.1 accessory gene regulator AgrB -
  AL494_RS04280 (AL494_04245) - 897212..897997 (-) 786 WP_011302730.1 carbon-nitrogen family hydrolase -
  AL494_RS04285 (AL494_04250) - 898168..898797 (-) 630 WP_047503250.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27982.79 Da        Isoelectric Point: 5.0875

>NTDB_id=168153 AL494_RS04260 WP_048787268.1 893670..894386(-) (agrA) [Staphylococcus saprophyticus strain FDAARGOS_137]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATVDPYDILERSKNLNDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRIIDCLETSESRLKLLSKESSVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELDQLDERFFRCHNSFVVNRHNIDSIDSKSRVVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=168153 AL494_RS04260 WP_048787268.1 893670..894386(-) (agrA) [Staphylococcus saprophyticus strain FDAARGOS_137]
ATGAAAATATTCATTTGTGAAGATGATGAAAGACAACGTGAGCACATGGTTTCTATTATTAATAACTACATCATGATTGA
AGAAAAGCCAATGGAAATCGAAGTTGCTACTGTTGATCCTTATGACATCTTAGAACGCTCTAAGAACCTCAATGATATTG
GGTGTTATTTTTTAGATATTCAGCTTGAAGCTGATATTAATGGTATCAAACTTGCTAGTGAGATTCGTAAACATGATCCT
GTAGGTAATATCATCTTTGTTACAAGTCACAGTGAGTTAACTTACCTAACATTTGTCTATAAGGTAGCCGCGATGGATTT
CATTTTTAAAGATGATCCAGATGAATTAAAATCAAGAATTATTGACTGTCTTGAAACTTCAGAATCAAGATTGAAGCTTC
TTTCAAAAGAAAGTAGTGTTGAAACAATTGAATTAAAACGTGGAAGTAATTCGATTTATGTCCAATATGATGATGTTATG
TTCTTTGAATCATCTACTAAATCGCATCGATTGATTGCACATCTTGATAATCGTCAAATTGAGTTTTATGGCAATTTAAA
AGAATTAGATCAACTTGATGAGCGATTTTTCAGATGTCATAATAGCTTTGTCGTCAATAGACACAATATAGATTCTATTG
ACTCTAAGTCACGTGTTGTCTATTTTAAAAATAATGAACATTGCTATGCATCTGTTAGAAATGTCAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

85.714

100

0.857

Multiple sequence alignment