Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   AXX03_RS27205 Genome accession   NZ_CP017306
Coordinates   5738092..5738616 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PA_150577     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5733092..5743616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXX03_RS27190 (AXX03_26375) aroB 5734208..5735314 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  AXX03_RS27195 (AXX03_26380) aroK 5735364..5735882 (-) 519 WP_003095833.1 shikimate kinase AroK -
  AXX03_RS27200 (AXX03_26385) pilQ 5735894..5738038 (-) 2145 WP_014603377.1 type 4a pilus secretin PilQ Machinery gene
  AXX03_RS27205 (AXX03_26390) comL/pilP 5738092..5738616 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  AXX03_RS27210 (AXX03_26395) pilO 5738613..5739236 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  AXX03_RS27215 (AXX03_26400) pilN 5739233..5739829 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  AXX03_RS27220 (AXX03_26405) pilM 5739829..5740893 (-) 1065 WP_096834204.1 type IV pilus assembly protein PilM Machinery gene
  AXX03_RS27225 (AXX03_26410) - 5741078..5743546 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=168137 AXX03_RS27205 WP_003095836.1 5738092..5738616(-) (comL/pilP) [Pseudomonas aeruginosa strain PA_150577]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=168137 AXX03_RS27205 WP_003095836.1 5738092..5738616(-) (comL/pilP) [Pseudomonas aeruginosa strain PA_150577]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362