Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   AL542_RS12310 Genome accession   NZ_CP014056
Coordinates   1803492..1806869 (-) Length   1125 a.a.
NCBI ID   WP_005503956.1    Uniprot ID   D0I873
Organism   Grimontia hollisae strain FDAARGOS_111     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1798492..1811869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL542_RS12290 (AL542_12170) - 1798990..1800018 (-) 1029 WP_005503959.1 ABC transporter permease -
  AL542_RS12295 (AL542_12175) - 1800021..1801007 (-) 987 WP_005503958.1 ABC transporter permease -
  AL542_RS12300 (AL542_12180) - 1801127..1802809 (-) 1683 WP_005503957.1 ABC transporter substrate-binding protein -
  AL542_RS12310 (AL542_12190) chiS 1803492..1806869 (-) 3378 WP_005503956.1 response regulator Regulator
  AL542_RS12315 (AL542_12195) rsmC 1807103..1808128 (-) 1026 WP_005503955.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  AL542_RS12320 (AL542_12200) - 1808210..1809292 (-) 1083 WP_005503954.1 AI-2E family transporter -
  AL542_RS12325 (AL542_12205) hemL 1809538..1810827 (-) 1290 WP_005503952.1 glutamate-1-semialdehyde 2,1-aminomutase -
  AL542_RS12330 (AL542_12210) erpA 1811060..1811401 (+) 342 WP_040528752.1 iron-sulfur cluster insertion protein ErpA -

Sequence

Protein


Download         Length: 1125 a.a.        Molecular weight: 126947.86 Da        Isoelectric Point: 5.7414

>NTDB_id=168136 AL542_RS12310 WP_005503956.1 1803492..1806869(-) (chiS) [Grimontia hollisae strain FDAARGOS_111]
MQKKQKFKRLKHTLMLAFLVLSITPLTLLAIFFLESHSSDLEQQSTTHLSFLRDNKKEQIISYFAARQSEVKSFSRSELA
TASGGRFYGLIAAFHQLGDTEKEARKAARERYAVSPPQNQAQTPQDANFIGSERYRLLHKRYDWAYKEHLKRSDFSDILL
VDIHGNVAYSALKDDVFAANLLSEQWRDTAIGKTFAELHDIANTPLVDDDDMPIVFSDFSQQENGEMVAWFAAPIIQQGY
LHSYVLFRLTNTTLDKMLKTSPQEKGYISTLLVGSDMIPRNIVSTERLTPINSNAIEAALSGLRDVGSFLSPNNERVLGA
YAPVQIQDKTWALILELPEEEAFARIYQLEKIFVVVMVIAILLVVIGSHLLSHSITAPLLKLTWAAEQVSAGDLDQKINN
TDREDEIGRLAVSFARMQRSVRDKLALIREQNKELEQNIQLIKQKNEELQQADRMKDDFLATTSHELRTPLHGMVGIAES
MLAGAEGPLPERQKHQLRMIINSGERLSNLVDDLLDYHKMRYGDVEISPQAVDTANAVRLVIELSSRLLGGKPVRIINQV
PIDLPLVRADGQRLEQVLYNLIGNAIKYTDEGKIIISATVLQGQLRIQVVDTGQGIPSDQLEYIFEPLTQARESNTQYRQ
GAGLGLSISRQLIDIMGGQLYVSSQPMVGTTFSFTLPLATEEDKAKTRLANNVHFAAPHAELEPVDYTQLPENPDGPLIL
VVDDEPVNLQILNNFLRLEGYRVKAVENGRQAIESVTMEKPALMLLDVMMPELSGYEVCTHLRERYSRAELPIIMLSALG
QVQDKVKGFDAGANDYLTKPFNKDELSARIRAYINASLTEQERAQNRALQKEIHFREQVEAGLREVQNRLLGMLDAASEG
IICVQEGGRITYANDACSEIFHLSAEQIERHQLDDFLAMALPEPEASRGHYSGQFRFKVEGDIVNIETDLITLPESSGLQ
MMLILNTGKKASSHRVHLLENAVSALADYAYDGDLEKLQQLRELGGEFTRMADRFSGNKPDKASILRETLVKVMTMTLSY
WSHSTGKTKFDLAEESGLWRVYLDRSTLQTRTLDKYLHVETVPKSPRWRTVISTIDFVLERCSDKNKERSELEILRERLQ
KLIAR

Nucleotide


Download         Length: 3378 bp        

>NTDB_id=168136 AL542_RS12310 WP_005503956.1 1803492..1806869(-) (chiS) [Grimontia hollisae strain FDAARGOS_111]
ATGCAAAAAAAACAGAAATTCAAGCGATTGAAGCACACGCTGATGCTCGCTTTTCTGGTGCTGAGTATTACGCCTCTCAC
CCTGCTGGCGATCTTCTTTTTGGAATCTCACAGCAGCGATCTCGAACAACAGAGCACCACGCACCTTTCCTTCCTTCGTG
ACAATAAGAAAGAGCAAATCATCAGTTATTTTGCGGCGCGTCAGTCCGAAGTAAAATCCTTCAGCCGTTCTGAACTGGCT
ACTGCCAGCGGTGGCCGTTTTTATGGTTTGATCGCCGCTTTCCATCAGCTTGGCGATACGGAAAAAGAAGCACGCAAAGC
GGCACGTGAACGATACGCGGTTTCCCCACCCCAGAACCAGGCCCAAACACCCCAAGATGCCAACTTCATTGGTAGCGAAC
GCTATCGCCTGCTTCACAAACGCTATGACTGGGCCTACAAGGAGCACCTGAAGCGTTCGGATTTTTCTGACATCCTGCTT
GTCGATATCCACGGCAATGTGGCGTATTCCGCATTGAAAGATGATGTGTTTGCCGCCAACCTGTTGTCTGAACAATGGCG
TGATACCGCCATCGGCAAAACCTTTGCTGAACTCCATGATATTGCCAATACCCCGTTGGTTGATGACGACGATATGCCTA
TCGTTTTCAGCGATTTTTCCCAGCAGGAAAACGGCGAGATGGTGGCCTGGTTTGCTGCCCCCATCATCCAGCAGGGATAT
CTACACAGCTATGTGTTGTTCCGGCTGACAAATACAACACTGGATAAGATGCTAAAAACGTCCCCGCAGGAAAAGGGGTA
TATCAGCACCCTCCTGGTGGGAAGCGACATGATCCCGCGAAATATTGTCAGCACAGAAAGGCTCACCCCAATCAATAGCA
ACGCCATTGAAGCGGCGCTATCCGGGCTTCGTGATGTCGGCAGTTTCCTCAGCCCCAACAATGAGCGTGTACTCGGCGCT
TACGCACCGGTTCAGATACAGGATAAAACCTGGGCACTTATTCTCGAATTACCGGAAGAGGAGGCATTCGCCCGCATCTA
TCAGCTGGAAAAAATTTTTGTGGTCGTCATGGTGATCGCTATCTTACTGGTCGTCATCGGCTCACACCTTCTGTCTCATT
CTATTACCGCACCACTGTTGAAGCTCACCTGGGCTGCAGAGCAAGTCTCAGCAGGCGATCTGGACCAGAAGATAAACAAT
ACCGATCGTGAAGATGAAATTGGCCGGCTTGCGGTCAGCTTTGCCCGTATGCAGCGCTCAGTACGTGACAAACTGGCGCT
TATTCGCGAGCAAAATAAGGAGCTTGAGCAAAACATTCAGCTTATCAAGCAAAAGAATGAAGAGTTACAGCAAGCAGATC
GAATGAAGGATGACTTCCTTGCCACTACATCCCATGAGCTTCGCACACCGCTTCACGGCATGGTAGGGATTGCTGAATCG
ATGCTTGCCGGGGCTGAAGGGCCACTACCGGAGCGCCAGAAGCACCAGCTTCGTATGATCATCAACAGCGGTGAACGCCT
GTCTAACCTGGTAGATGATCTGCTCGATTACCATAAGATGCGCTATGGCGATGTGGAGATCTCCCCACAAGCCGTTGACA
CTGCCAATGCCGTACGTCTGGTGATTGAACTTTCCAGCCGCCTGTTGGGCGGAAAACCGGTACGCATCATCAACCAGGTT
CCCATTGACCTGCCACTTGTCAGGGCTGATGGACAGCGGCTCGAACAAGTGCTTTACAACCTGATAGGCAATGCCATTAA
GTATACTGACGAAGGGAAAATCATCATTTCCGCGACGGTACTGCAAGGGCAGTTACGGATCCAGGTGGTGGATACCGGTC
AGGGCATTCCTTCCGATCAGTTGGAATACATCTTTGAACCACTGACGCAGGCCAGAGAATCCAACACCCAGTATCGCCAG
GGCGCCGGACTCGGCCTTTCAATCAGTCGTCAATTGATTGATATCATGGGCGGCCAGTTGTATGTCTCCAGCCAGCCTAT
GGTCGGCACAACATTCAGCTTCACCTTGCCCCTAGCCACCGAAGAAGATAAAGCAAAAACACGTCTTGCCAACAACGTGC
ACTTTGCTGCCCCACATGCCGAGCTTGAGCCGGTTGATTACACCCAGTTGCCGGAAAATCCGGACGGCCCCCTTATTCTG
GTTGTCGACGATGAACCAGTGAACCTGCAAATTCTCAACAACTTCCTGCGTCTGGAAGGGTATCGTGTCAAGGCCGTAGA
AAATGGTCGGCAAGCGATTGAGTCAGTCACCATGGAAAAGCCAGCGCTGATGCTGCTCGATGTGATGATGCCAGAACTCA
GCGGCTATGAAGTATGTACTCACCTTCGTGAACGCTATAGCCGGGCAGAGCTGCCGATCATCATGCTTTCCGCACTGGGA
CAGGTTCAGGACAAAGTGAAAGGGTTTGATGCCGGGGCGAATGATTACCTGACCAAGCCATTTAATAAAGATGAGCTCAG
TGCCCGCATCCGTGCGTATATCAATGCCTCTCTGACTGAACAGGAACGGGCACAAAACCGTGCTCTACAGAAAGAAATCC
ATTTCAGGGAGCAAGTGGAAGCGGGACTCCGGGAAGTACAAAACCGTCTGCTCGGCATGCTAGATGCAGCCTCTGAAGGC
ATTATCTGCGTTCAGGAAGGAGGCCGTATAACCTATGCCAACGATGCCTGCAGTGAGATTTTCCATTTAAGCGCTGAACA
GATTGAGCGCCACCAGTTGGATGATTTCCTCGCCATGGCACTACCTGAGCCAGAAGCAAGCCGGGGTCATTACAGTGGTC
AGTTCAGGTTCAAGGTAGAAGGCGACATTGTCAATATTGAGACCGATCTCATCACGTTGCCAGAGTCATCAGGCCTGCAG
ATGATGCTTATCCTGAACACCGGTAAAAAAGCCTCATCACACCGGGTACACCTGCTGGAGAATGCGGTATCAGCCCTTGC
CGATTATGCTTATGACGGCGATCTGGAGAAACTGCAACAACTCAGGGAACTGGGTGGGGAGTTTACCCGTATGGCAGACC
GTTTCTCAGGTAACAAGCCGGACAAAGCCAGTATACTGCGTGAAACCTTAGTAAAGGTCATGACCATGACACTGAGCTAC
TGGAGCCACTCAACCGGAAAGACCAAGTTTGATCTTGCAGAAGAAAGCGGCTTGTGGCGTGTGTATCTGGACCGAAGCAC
CCTACAAACCCGGACACTGGATAAATACCTGCACGTCGAGACAGTACCCAAATCCCCGCGCTGGCGCACGGTGATCAGCA
CGATTGACTTTGTGTTGGAACGCTGCAGCGATAAGAACAAAGAGCGAAGCGAACTCGAAATACTCAGGGAGCGTCTCCAA
AAACTGATTGCCCGCTAG

Domains

Predicted by InterproScan.

HAMP domain (HAMP)

(370-422)

His Kinase A (phospho-acceptor) domain (HisKA)

(455-521)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(570-679)

PAS domain (PAS_8)

(869-925)

Response regulator receiver domain (Response_reg)

(719-831)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D0I873

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

56.306

100

0.564

Multiple sequence alignment