Detailed information NTG0168098

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AL539_RS13500
• Genome accession: NZ_CP014053
• Coordinates: 2500811..2501818 (-)
• Length: 335 a.a.
• NCBI ID: WP_064376652.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain FDAARGOS_108
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2495811..2506818

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL539_RS13470 (AL539_21700)	-	2496325..2496756 (-)	432	WP_024703421.1	DUF2787 family protein	-
AL539_RS13475 (AL539_21705)	radC	2496753..2497226 (-)	474	WP_064353570.1	DNA repair protein RadC	-
AL539_RS13480 (AL539_21710)	-	2497630..2497854 (+)	225	WP_064353571.1	hypothetical protein	-
AL539_RS13485 (AL539_21715)	hslU	2498018..2499349 (-)	1332	WP_104975802.1	HslU--HslV peptidase ATPase subunit	-
AL539_RS13490 (AL539_21720)	hslV	2499373..2499924 (-)	552	WP_005383176.1	ATP-dependent protease subunit HslV	-
AL539_RS13495 (AL539_21725)	ftsN	2500040..2500588 (-)	549	WP_025998522.1	cell division protein FtsN	-
AL539_RS13500 (AL539_21730)	cytR	2500811..2501818 (-)	1008	WP_064376652.1	DNA-binding transcriptional regulator CytR	Regulator
AL539_RS13505 (AL539_21735)	priA	2502142..2504346 (-)	2205	WP_104975803.1	primosomal protein N'	-
AL539_RS13515 (AL539_21745)	rpmE	2504642..2504863 (+)	222	WP_005379546.1	50S ribosomal protein L31	-
AL539_RS13520 (AL539_21750)	rpsJ	2505319..2505630 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
AL539_RS13525 (AL539_21755)	rplC	2505645..2506274 (+)	630	WP_005379555.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36837.34 Da
• Isoelectric Point: 5.9760

>NTDB_id=168098 AL539_RS13500 WP_064376652.1 2500811..2501818(-) (cytR) [Vibrio alginolyticus strain FDAARGOS_108]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKSIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide

• Length: 1008 bp

>NTDB_id=168098 AL539_RS13500 WP_064376652.1 2500811..2501818(-) (cytR) [Vibrio alginolyticus strain FDAARGOS_108]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
GGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGAAGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTTCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTTAATCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AACAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCTGAACTCGAGCTTCCGACAGTACATATTGACAAC
CTGACCTCAGCATTTGAAGCGGTGAATTACCTGACCCAATTAGGTCATAAAAGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAGTTCCGCCAACAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCACAATATA
GTGTCATTACTGAATTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAGCCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTCCCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACTATCTCTCAGCCTCGCTATG
AGATTGGTCGACAAGCAATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGCGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	97.605	99.701	0.973
cytR	Vibrio cholerae C6706	89.521	99.701	0.893