Detailed information NTG0168078

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AL539_RS08935
• Genome accession: NZ_CP014053
• Coordinates: 1590762..1591748 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain FDAARGOS_108
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1585762..1596748

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL539_RS08920 (AL539_17150)	recA	1586307..1587350 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
AL539_RS08925 (AL539_17155)	pncC	1587551..1588033 (-)	483	WP_005383794.1	nicotinamide-nucleotide amidase	-
AL539_RS08930 (AL539_17160)	mutS	1588118..1590679 (+)	2562	WP_104975585.1	DNA mismatch repair protein MutS	-
AL539_RS08935 (AL539_17165)	rpoS	1590762..1591748 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
AL539_RS08940 (AL539_17170)	-	1591829..1592752 (-)	924	WP_005380889.1	peptidoglycan DD-metalloendopeptidase family protein	-
AL539_RS08945 (AL539_17175)	-	1592766..1593392 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AL539_RS08950 (AL539_17180)	surE	1593392..1594168 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
AL539_RS08955 (AL539_17185)	truD	1594168..1595211 (-)	1044	WP_104975586.1	tRNA pseudouridine(13) synthase TruD	-
AL539_RS08960 (AL539_17190)	ispF	1595257..1595733 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AL539_RS08965 (AL539_17195)	ispD	1595748..1596455 (-)	708	WP_017633548.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AL539_RS08970 (AL539_17200)	ftsB	1596457..1596738 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=168078 AL539_RS08935 WP_005380887.1 1590762..1591748(-) (rpoS) [Vibrio alginolyticus strain FDAARGOS_108]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=168078 AL539_RS08935 WP_005380887.1 1590762..1591748(-) (rpoS) [Vibrio alginolyticus strain FDAARGOS_108]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGATAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTATTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854