Detailed information NTG0168077

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AXX03_RS06925
• Genome accession: NZ_CP017306
• Coordinates: 1447664..1448668 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PA_150577
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1442664..1453668

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AXX03_RS06895 (AXX03_06710)	fghA	1442756..1443607 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
AXX03_RS06900 (AXX03_06715)	ispF	1443678..1444151 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AXX03_RS06905 (AXX03_06720)	truD	1444148..1445215 (+)	1068	WP_014602573.1	tRNA pseudouridine(13) synthase TruD	-
AXX03_RS06910 (AXX03_06725)	surE	1445203..1445952 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
AXX03_RS06915 (AXX03_06730)	-	1445985..1446620 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AXX03_RS06920 (AXX03_06735)	-	1446666..1447559 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
AXX03_RS06925 (AXX03_06740)	rpoS	1447664..1448668 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
AXX03_RS06930 (AXX03_06745)	fdxA	1449095..1449418 (-)	324	WP_003092272.1	ferredoxin FdxA	-
AXX03_RS06935 (AXX03_06750)	mutS	1449485..1452052 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
AXX03_RS06945 (AXX03_06755)	-	1452178..1453185 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=168077 AXX03_RS06925 WP_003113871.1 1447664..1448668(+) (rpoS) [Pseudomonas aeruginosa strain PA_150577]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=168077 AXX03_RS06925 WP_003113871.1 1447664..1448668(+) (rpoS) [Pseudomonas aeruginosa strain PA_150577]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653