Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AL539_RS03370 Genome accession   NZ_CP014053
Coordinates   481400..482926 (-) Length   508 a.a.
NCBI ID   WP_104975306.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FDAARGOS_108     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 476400..487926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL539_RS03350 (AL539_11595) - 476419..477849 (-) 1431 WP_169644504.1 lipopolysaccharide biosynthesis protein -
  AL539_RS03355 (AL539_11600) - 477842..479014 (-) 1173 WP_104975303.1 glycosyltransferase -
  AL539_RS03360 (AL539_11605) - 479026..480210 (-) 1185 WP_104975304.1 glycosyltransferase -
  AL539_RS03365 (AL539_11610) - 480355..481425 (-) 1071 WP_104975305.1 glycosyltransferase family 4 protein -
  AL539_RS03370 (AL539_11615) luxO 481400..482926 (-) 1527 WP_104975306.1 sigma-54 dependent transcriptional regulator Regulator
  AL539_RS03375 (AL539_11620) - 483235..483615 (-) 381 WP_005377636.1 Hpt domain-containing protein -
  AL539_RS03380 (AL539_11625) - 483627..484313 (-) 687 WP_005377635.1 AAA family ATPase -
  AL539_RS03385 (AL539_11630) - 484313..486415 (-) 2103 WP_104975307.1 SLBB domain-containing protein -
  AL539_RS03390 (AL539_11635) - 486412..487278 (-) 867 WP_005377631.1 OmpA family protein -
  AL539_RS03395 (AL539_11640) - 487305..487625 (-) 321 WP_017634929.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56627.53 Da        Isoelectric Point: 5.9083

>NTDB_id=168067 AL539_RS03370 WP_104975306.1 481400..482926(-) (luxO) [Vibrio alginolyticus strain FDAARGOS_108]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHTIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVSHLPAQLTKKSKVTKTTTPA
HVAQESTNIAPITPPPVYTEEPSPSAVEPLITAAEQPGTPSSAATSPYFNADGTIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=168067 AL539_RS03370 WP_104975306.1 481400..482926(-) (luxO) [Vibrio alginolyticus strain FDAARGOS_108]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTTAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGAAGCGATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGCTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCACACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACGTCAGTTGCATTGCACCTTAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAGTCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGTCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTGTTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCCGTCCACCGCCAGAG
CGACCGTAAAGACAAGCCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGCACGCTTTTTCTT
GATGAGCTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGCTTTCTACAAACGGGCACTTACACCCCTCTTGG
TGGCACTCGAGAAATGAAAGTGGATGTGAGAATCATTTGTGCCACTAACCGAGATCCATTAACAGAAGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATCGATATGCCCCCATTACGTGAACGAGGAAGTGACATC
GTCACGCTTGCCAAGCACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGTGAAGCTCA
ACATACCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ACGACGAAAAAGTCACGGTGAGCCACCTACCCGCTCAACTTACTAAAAAGTCTAAAGTGACGAAAACAACGACGCCTGCG
CATGTTGCTCAAGAGTCAACAAACATTGCACCAATCACACCACCACCTGTTTATACTGAGGAACCTTCACCTTCTGCGGT
CGAACCTTTGATTACCGCAGCGGAGCAGCCTGGTACACCGTCCTCTGCTGCTACCTCACCGTACTTTAACGCTGATGGAA
CCATTCGCCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAAAACGCAATTGCGTACTGTGATGGCAACGTCCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.047

0.484

Multiple sequence alignment