Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   WH25_RS09475 Genome accession   NZ_CP017295
Coordinates   1977078..1977536 (-) Length   152 a.a.
NCBI ID   WP_012130789.1    Uniprot ID   A8AZ12
Organism   Streptococcus gordonii strain IE35     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1972078..1982536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS09460 (WH25_09460) manA 1972467..1973411 (-) 945 WP_012130786.1 mannose-6-phosphate isomerase, class I -
  WH25_RS09465 (WH25_09465) rcrQ 1973572..1975329 (-) 1758 WP_046164609.1 ABC transporter ATP-binding protein Regulator
  WH25_RS09470 (WH25_09470) rcrP 1975319..1977085 (-) 1767 WP_046164750.1 ABC transporter ATP-binding protein Regulator
  WH25_RS09475 (WH25_09475) rcrR 1977078..1977536 (-) 459 WP_012130789.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  WH25_RS09480 (WH25_09480) - 1977807..1978376 (-) 570 WP_046164610.1 hypothetical protein -
  WH25_RS09485 (WH25_09485) - 1978385..1978795 (-) 411 WP_046164611.1 peptide deformylase -
  WH25_RS09490 (WH25_09490) scrK 1978844..1979743 (-) 900 WP_046164612.1 fructokinase ScrK -
  WH25_RS09495 (WH25_09495) - 1979984..1980508 (-) 525 WP_046164613.1 hypothetical protein -
  WH25_RS09500 (WH25_09500) glmS 1980624..1982435 (-) 1812 WP_046164614.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17556.33 Da        Isoelectric Point: 8.5458

>NTDB_id=168036 WH25_RS09475 WP_012130789.1 1977078..1977536(-) (rcrR) [Streptococcus gordonii strain IE35]
MEKPLLEFKRFGRKTQRIIEKRAKVCGMEFMGGPQGQVLHIVSHRAKRGLSTFIRDIEHELDISKSVASNLIKRMEKNGS
IFLEVSETDKRAKMIHLTAQSKQQLKELHDFFNEIDRCLLQGVSEEELATFTLVMAKFHQNIEKLESEDANV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=168036 WH25_RS09475 WP_012130789.1 1977078..1977536(-) (rcrR) [Streptococcus gordonii strain IE35]
TTGGAAAAGCCTTTATTAGAATTCAAACGCTTTGGCCGAAAGACTCAACGGATCATAGAGAAACGCGCTAAGGTTTGTGG
GATGGAATTTATGGGAGGTCCACAAGGTCAAGTTCTTCATATCGTATCTCACCGAGCGAAGAGAGGACTTTCGACCTTCA
TTAGGGATATTGAGCATGAGTTAGATATTTCTAAGTCGGTGGCCAGCAATCTAATCAAACGGATGGAAAAAAATGGATCC
ATCTTTCTTGAGGTAAGCGAGACAGATAAAAGGGCCAAGATGATTCATTTAACAGCCCAGTCTAAACAACAATTGAAAGA
GTTACATGATTTTTTTAATGAAATTGATCGCTGTCTCCTCCAGGGTGTTTCAGAAGAAGAATTGGCAACCTTCACTCTGG
TTATGGCGAAATTCCACCAAAATATTGAGAAGTTAGAAAGCGAGGATGCCAATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AZ12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

40.411

96.053

0.388