Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AL549_RS18975 Genome accession   NZ_CP014049
Coordinates   2269344..2269862 (-) Length   172 a.a.
NCBI ID   WP_011079537.1    Uniprot ID   Q7MHS7
Organism   Vibrio vulnificus strain FDAARGOS_119     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2264344..2274862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL549_RS18950 (AL549_17435) rimM 2264419..2264967 (-) 549 WP_061058912.1 ribosome maturation factor RimM -
  AL549_RS18955 (AL549_17440) rpsP 2264983..2265231 (-) 249 WP_011079541.1 30S ribosomal protein S16 -
  AL549_RS18960 (AL549_17445) ffh 2265506..2266882 (-) 1377 WP_011079540.1 signal recognition particle protein -
  AL549_RS18965 (AL549_17450) - 2267096..2267890 (+) 795 WP_011079539.1 cytochrome C assembly family protein -
  AL549_RS18970 (AL549_17455) - 2267977..2269254 (+) 1278 WP_011079538.1 HlyC/CorC family transporter -
  AL549_RS18975 (AL549_17460) luxS 2269344..2269862 (-) 519 WP_011079537.1 S-ribosylhomocysteine lyase Regulator
  AL549_RS18980 (AL549_17465) - 2269913..2270518 (-) 606 WP_223370886.1 hypothetical protein -
  AL549_RS18985 (AL549_17470) gshA 2270556..2272121 (-) 1566 WP_061058913.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18899.69 Da        Isoelectric Point: 5.2384

>NTDB_id=168019 AL549_RS18975 WP_011079537.1 2269344..2269862(-) (luxS) [Vibrio vulnificus strain FDAARGOS_119]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGAPSEQDVASAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAAGISVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=168019 AL549_RS18975 WP_011079537.1 2269344..2269862(-) (luxS) [Vibrio vulnificus strain FDAARGOS_119]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCAGCGGTGCGTGTGGCAAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACGTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTTAATGGCGCATCGGTTGAGATCATCGATATCTCACCG
ATGGGTTGTCGTACCGGTTTCTACATGAGCTTAATTGGTGCGCCGAGTGAGCAAGACGTGGCATCTGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGTGGTACCGCGGCCATGC
ACTCGCTAGATGAAGCGAAGCAAATCGCGCAGAACATTCTGGCAGCAGGAATTTCGGTGAATAAAAACGATGAACTGGCA
TTGCCAGAAGCGATGTTGAAAGAGCTCAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment