Detailed information
Bioinformatically predicted
Overview
| Name | scnR | Type | Regulator |
| Locus tag | WH25_RS07955 | Genome accession | NZ_CP017295 |
| Coordinates | 1665945..1666601 (-) | Length | 218 a.a. |
| NCBI ID | WP_008809355.1 | Uniprot ID | A8AY37 |
| Organism | Streptococcus gordonii strain IE35 | ||
| Function | regulate comX expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1660945..1671601
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WH25_RS07950 (WH25_07950) | - | 1664587..1665948 (-) | 1362 | WP_045773236.1 | sensor histidine kinase | - |
| WH25_RS07955 (WH25_07955) | scnR | 1665945..1666601 (-) | 657 | WP_008809355.1 | response regulator transcription factor | Regulator |
| WH25_RS07960 (WH25_07960) | - | 1666620..1667837 (-) | 1218 | WP_008809356.1 | ABC transporter permease | - |
| WH25_RS07965 (WH25_07965) | - | 1667845..1668525 (-) | 681 | WP_008809357.1 | ABC transporter ATP-binding protein | - |
| WH25_RS07970 (WH25_07970) | - | 1668512..1669765 (-) | 1254 | WP_008809358.1 | efflux RND transporter periplasmic adaptor subunit | - |
| WH25_RS07975 (WH25_07975) | - | 1669796..1670059 (-) | 264 | WP_008809359.1 | hypothetical protein | - |
| WH25_RS07980 (WH25_07980) | - | 1670335..1671345 (+) | 1011 | WP_046165371.1 | lactonase family protein | - |
Sequence
Protein
Download Length: 218 a.a. Molecular weight: 24915.92 Da Isoelectric Point: 4.7477
>NTDB_id=168014 WH25_RS07955 WP_008809355.1 1665945..1666601(-) (scnR) [Streptococcus gordonii strain IE35]
MYKILVVEDDTTINQVICEFLKESNYSVTPVYDGAEALRQFEEETFDLVILDMMLPSVSGLDVLKEIRKTSQIPVMILTA
LDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRTAVYSEIVIGDLRVVLEDCTIFWQGEKLALTKKEYEILEVLA
KRKGHLVTRDQLMNTIWGYSELDSRVLDNHIKNIRKKVPGIPLSTITGMGYQLGGDQA
MYKILVVEDDTTINQVICEFLKESNYSVTPVYDGAEALRQFEEETFDLVILDMMLPSVSGLDVLKEIRKTSQIPVMILTA
LDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRTAVYSEIVIGDLRVVLEDCTIFWQGEKLALTKKEYEILEVLA
KRKGHLVTRDQLMNTIWGYSELDSRVLDNHIKNIRKKVPGIPLSTITGMGYQLGGDQA
Nucleotide
Download Length: 657 bp
>NTDB_id=168014 WH25_RS07955 WP_008809355.1 1665945..1666601(-) (scnR) [Streptococcus gordonii strain IE35]
ATGTATAAGATTTTGGTCGTAGAAGATGATACTACTATCAACCAAGTCATATGTGAATTTTTAAAAGAAAGTAACTACAG
TGTTACGCCAGTTTATGATGGCGCAGAGGCTCTACGTCAGTTTGAAGAAGAGACTTTTGATTTAGTCATTTTAGATATGA
TGTTGCCATCCGTTAGTGGTTTAGATGTTCTCAAGGAAATCCGTAAGACATCGCAGATCCCAGTCATGATTTTAACTGCT
CTAGATGATGAATATACCCAGCTAGTGAGTTTTAATCACTTGATTAGCGATTACGTGACTAAGCCTTTTTCACCCCTCAT
TTTGGTGAAAAGAATAGAAAATATTTTACGTCGGACTGCTGTTTATTCTGAAATTGTCATCGGTGACTTGCGCGTGGTTT
TAGAAGATTGTACGATTTTCTGGCAAGGAGAAAAGCTAGCTCTGACCAAGAAGGAGTACGAAATTCTAGAAGTTCTTGCT
AAACGTAAGGGCCATTTAGTGACAAGAGACCAGCTTATGAATACTATTTGGGGCTATAGTGAGCTAGATAGTCGTGTCTT
GGACAATCATATCAAGAATATTCGCAAGAAAGTTCCTGGAATTCCTTTGTCAACCATTACTGGTATGGGCTATCAATTGG
GTGGAGATCAGGCGTGA
ATGTATAAGATTTTGGTCGTAGAAGATGATACTACTATCAACCAAGTCATATGTGAATTTTTAAAAGAAAGTAACTACAG
TGTTACGCCAGTTTATGATGGCGCAGAGGCTCTACGTCAGTTTGAAGAAGAGACTTTTGATTTAGTCATTTTAGATATGA
TGTTGCCATCCGTTAGTGGTTTAGATGTTCTCAAGGAAATCCGTAAGACATCGCAGATCCCAGTCATGATTTTAACTGCT
CTAGATGATGAATATACCCAGCTAGTGAGTTTTAATCACTTGATTAGCGATTACGTGACTAAGCCTTTTTCACCCCTCAT
TTTGGTGAAAAGAATAGAAAATATTTTACGTCGGACTGCTGTTTATTCTGAAATTGTCATCGGTGACTTGCGCGTGGTTT
TAGAAGATTGTACGATTTTCTGGCAAGGAGAAAAGCTAGCTCTGACCAAGAAGGAGTACGAAATTCTAGAAGTTCTTGCT
AAACGTAAGGGCCATTTAGTGACAAGAGACCAGCTTATGAATACTATTTGGGGCTATAGTGAGCTAGATAGTCGTGTCTT
GGACAATCATATCAAGAATATTCGCAAGAAAGTTCCTGGAATTCCTTTGTCAACCATTACTGGTATGGGCTATCAATTGG
GTGGAGATCAGGCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| scnR | Streptococcus mutans UA159 |
38.938 |
100 |
0.404 |
| micA | Streptococcus pneumoniae Cp1015 |
37.391 |
100 |
0.394 |
| vicR | Streptococcus mutans UA159 |
36.797 |
100 |
0.39 |