Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AL549_RS11680 Genome accession   NZ_CP014049
Coordinates   942397..943818 (-) Length   473 a.a.
NCBI ID   WP_011150112.1    Uniprot ID   A0AAN1UC63
Organism   Vibrio vulnificus strain FDAARGOS_119     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 937397..948818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL549_RS11650 (AL549_11480) - 937804..938571 (+) 768 WP_061058450.1 phospholipase A -
  AL549_RS11655 (AL549_11485) - 938810..939214 (+) 405 WP_011080631.1 hypothetical protein -
  AL549_RS11660 (AL549_11490) - 939288..940391 (-) 1104 WP_061058451.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  AL549_RS11665 (AL549_11495) - 940594..940986 (-) 393 WP_011150110.1 SulA-like leucine-rich domain-containing protein -
  AL549_RS11670 (AL549_11500) - 941299..941976 (-) 678 WP_011080628.1 LrgB family protein -
  AL549_RS11675 (AL549_11505) - 941979..942350 (-) 372 WP_045597846.1 CidA/LrgA family protein -
  AL549_RS11680 (AL549_11510) sbcB 942397..943818 (-) 1422 WP_011150112.1 exodeoxyribonuclease I Machinery gene
  AL549_RS11685 (AL549_11515) - 943892..944590 (-) 699 WP_045597850.1 oxidoreductase -
  AL549_RS11690 (AL549_11520) - 945095..946333 (+) 1239 WP_061058452.1 M12 family metallo-peptidase -
  AL549_RS11695 (AL549_11525) cobT 946523..947551 (+) 1029 WP_039553417.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  AL549_RS11700 (AL549_11530) - 947553..948320 (+) 768 WP_061058453.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54741.99 Da        Isoelectric Point: 5.1722

>NTDB_id=168010 AL549_RS11680 WP_011150112.1 942397..943818(-) (sbcB) [Vibrio vulnificus strain FDAARGOS_119]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAAN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=168010 AL549_RS11680 WP_011150112.1 942397..943818(-) (sbcB) [Vibrio vulnificus strain FDAARGOS_119]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGTCCAGCAAAAGATCGCCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCACTCATTACCGGAATTACGCCGCAAAAAGCGCAGAAAGAAGGCTTACCCGAGCCA
GAATTTATCGCAAAAATCCACGCAGAGTTGTCGCGTCCGAACACCACTAGCCTTGGCTACAACAGCATTCGCTTTGATGA
CGAAGTCACGCGTTATACCTGCTATCGCAACTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCTGTGGCCAATGGCATTGAACACAGTAACGCCCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGCTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGTGAATGCCAATAC
ACCAGTTGGATAGTGCCGTTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTTGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACTCGTCATGATGAGCTCGGCGATTTATTGCCTG
TGCCAGTTAAATTGGTGCATTTGAATAAGTGCCCGATTTTAGCACCAGCCAAAACCCTCACTGCGGAGAATGCCGCCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCACCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTCGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACGCACCTTGCCGCTTTGGACATCACGTTTAACGATAAACGC
ATCGAGCCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.72

99.789

0.805

Multiple sequence alignment