Detailed information NTG0168008

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: WH25_RS07250
• Genome accession: NZ_CP017295
• Coordinates: 1514259..1515371 (-)
• Length: 370 a.a.
• NCBI ID: WP_008809216.1
• Uniprot ID: -
• Organism: Streptococcus gordonii strain IE35
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1509259..1520371

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WH25_RS07215 (WH25_07215)	mnmE	1509506..1510879 (+)	1374	WP_046165489.1	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	-
WH25_RS07220 (WH25_07220)	-	1511020..1511589 (-)	570	WP_046165488.1	TlpA family protein disulfide reductase	-
WH25_RS07225 (WH25_07225)	-	1512022..1512720 (-)	699	WP_008809213.1	LrgB family protein	-
WH25_RS07230 (WH25_07230)	-	1512713..1513093 (-)	381	WP_046165487.1	CidA/LrgA family protein	-
WH25_RS07245 (WH25_07245)	-	1513868..1514206 (-)	339	WP_012000664.1	metal-sulfur cluster assembly factor	-
WH25_RS07250 (WH25_07250)	rpoS	1514259..1515371 (-)	1113	WP_008809216.1	RNA polymerase sigma factor RpoD	Regulator
WH25_RS07255 (WH25_07255)	dnaG	1515374..1517155 (-)	1782	WP_301280386.1	DNA primase	-
WH25_RS07260 (WH25_07260)	mscL	1517362..1517742 (+)	381	WP_045503293.1	large conductance mechanosensitive channel protein MscL	-
WH25_RS07265 (WH25_07265)	rpsU	1517840..1518016 (-)	177	WP_000048054.1	30S ribosomal protein S21	-
WH25_RS07270 (WH25_07270)	-	1518143..1518826 (-)	684	WP_046165485.1	DUF4956 domain-containing protein	-
WH25_RS07275 (WH25_07275)	-	1518837..1519568 (-)	732	WP_046165484.1	polyphosphate polymerase domain-containing protein	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42405.08 Da
• Isoelectric Point: 4.5140

>NTDB_id=168008 WH25_RS07250 WP_008809216.1 1514259..1515371(-) (rpoS) [Streptococcus gordonii strain IE35]
MATKQKEVTTFDVQVAEFIRNHKKTGTAIDDEINDKLIIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLHNEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAILVEQGDTEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED

Nucleotide

• Length: 1113 bp

>NTDB_id=168008 WH25_RS07250 WP_008809216.1 1514259..1515371(-) (rpoS) [Streptococcus gordonii strain IE35]
ATGGCTACAAAACAAAAAGAAGTAACAACATTTGACGTACAAGTTGCAGAATTTATTCGAAACCATAAAAAAACTGGTAC
GGCAATTGATGATGAAATTAATGATAAATTGATTATTCCTTTTACCTTAGATGCAGATGGTATCGAAGATCTATTGCAAC
GTATCCAAGATGCAGGGATCTCTATCACAGATAAAGAAGGGAATCCAAGTGCACGTGTTTTACACAACGAAGAGGAAGAA
GCAGAGCTGACTGATGAAGAACTTTTAGGTAGCAATTCAGCTAAAGTCAACGATCCTGTTCGTATGTACTTGAAAGAAAT
TGGAGTCGTTCCACTTTTGACAAACGAAGAAGAGCAAGAATTGGCAATCTTGGTAGAGCAGGGAGATACTGAGGCTAAGC
AACGTTTGGCTGAAGCCAACCTTCGCTTGGTAGTTTCTATTGCAAAGCGTTATGTTGGACGTGGCATGCAGTTCCTTGAC
TTGATCCAAGAAGGAAATATGGGCTTGATGAAGGCTGTTGACAAGTTTGACTATACCAAAGGATTTAAGTTTTCAACCTA
TGCAACTTGGTGGATCCGTCAGGCCATTACTCGTGCGATCGCTGACCAAGCTAGAACAATCCGAATTCCAGTTCACATGG
TTGAAACGATTAACAAGCTAGTTCGTGAGCAACGTAATCTCTTGCAAGAATTAGGTCAAGATCCAACACCTGAGCAGATT
GCTGAGCGTATGGATATGACACCAGATAAGGTTCGTGAGATTCTTAAGATTGCTCAGGAGCCAGTTTCGCTGGAAACACC
TATCGGTGAGGAAGATGATAGCCATCTGGGTGACTTTATCGAAGACGAAGTAATTGAAAATCCAGTTGATTATACAACTC
GTGTTGTTCTTCGTGAGCAGCTGGATGAAGTTTTAGACACCCTTACAGATCGTGAAGAAAATGTTCTTCGTCTGCGTTTT
GGTTTGGATGATGGTAAAATGCGGACCTTGGAAGATGTTGGTAAAGTCTTCAATGTGACCCGTGAACGCATCCGCCAAAT
CGAAGCTAAAGCCCTACGTAAACTACGCCACCCAAGTCGTAGCAAGCCACTCCGTGATTTCATTGAAGATTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (14-87)

• Sigma-70 region 2 (Sigma70_r2) (136-205)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (98-130)

• Sigma-70 region 3 (Sigma70_r3) (215-291)

• Sigma-70, region 4 (Sigma70_r4) (304-357)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	46.918	78.919	0.37