Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   WH25_RS07120 Genome accession   NZ_CP017295
Coordinates   1491632..1492096 (-) Length   154 a.a.
NCBI ID   WP_008809192.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1486632..1497096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS07105 (WH25_07105) plsY 1487368..1488012 (+) 645 WP_046165506.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  WH25_RS07110 (WH25_07110) nt5e 1488030..1490210 (-) 2181 WP_046165505.1 cell surface ecto-5'-nucleotidase Nt5e -
  WH25_RS07115 (WH25_07115) - 1490351..1491619 (-) 1269 WP_046165504.1 dihydroorotase -
  WH25_RS07120 (WH25_07120) mutX 1491632..1492096 (-) 465 WP_008809192.1 NUDIX hydrolase Machinery gene
  WH25_RS07125 (WH25_07125) - 1492105..1492758 (-) 654 WP_046165503.1 uracil-DNA glycosylase -
  WH25_RS07130 (WH25_07130) - 1492793..1493545 (-) 753 WP_046165502.1 DUF4336 domain-containing protein -
  WH25_RS07135 (WH25_07135) - 1493548..1495101 (-) 1554 WP_046165950.1 membrane protein -
  WH25_RS07140 (WH25_07140) pyrE 1495236..1495865 (-) 630 WP_008809196.1 orotate phosphoribosyltransferase -
  WH25_RS07145 (WH25_07145) pyrF 1495944..1496636 (-) 693 WP_046165501.1 orotidine-5'-phosphate decarboxylase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17801.23 Da        Isoelectric Point: 4.2903

>NTDB_id=168007 WH25_RS07120 WP_008809192.1 1491632..1492096(-) (mutX) [Streptococcus gordonii strain IE35]
MVQLATICYIDNGREFLMLHRNKKPNDVHAGKWIGVGGKLELGETPQECAAREILEETGLKAKPVLKGIITFPEFTPNLD
WYTYVFKVTEFEGELIDCNEGTLEWVPYDQVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=168007 WH25_RS07120 WP_008809192.1 1491632..1492096(-) (mutX) [Streptococcus gordonii strain IE35]
ATGGTTCAGTTAGCAACGATTTGTTATATTGATAATGGCCGGGAGTTTCTTATGTTGCATCGCAACAAAAAGCCCAATGA
TGTCCATGCTGGGAAGTGGATTGGTGTTGGTGGCAAGCTAGAGCTAGGAGAAACTCCGCAGGAATGCGCTGCGCGCGAGA
TTCTAGAGGAGACGGGACTAAAGGCCAAGCCCGTTCTCAAAGGCATTATTACTTTTCCAGAGTTTACTCCTAATTTGGAC
TGGTATACCTATGTTTTTAAGGTGACCGAGTTTGAGGGGGAACTGATTGACTGCAATGAAGGTACTTTGGAATGGGTGCC
CTATGACCAGGTCTTATCTAAACCAACCTGGGAAGGCGATCATACCTTTGTTGAGTGGCTTTTAGAAGACAAGCCTTTCT
TTTCTGCAAAGTTTGTTTATGACGGGGATAAACTGCTGGATACGCAGGTAGACTTTTACGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(4-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

92.857

100

0.929