Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AL464_RS14255 Genome accession   NZ_CP014046
Coordinates   2751346..2752767 (+) Length   473 a.a.
NCBI ID   WP_025605651.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain ATCC 17802     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2746346..2757767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL464_RS14235 (AL464_12850) - 2746404..2747156 (-) 753 WP_031822847.1 adenosylcobinamide-GDP ribazoletransferase -
  AL464_RS14240 (AL464_12855) cobT 2747201..2748244 (-) 1044 WP_029804701.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  AL464_RS14245 (AL464_12860) - 2748929..2749624 (+) 696 WP_017448627.1 NAD(P)H-binding protein -
  AL464_RS14250 (AL464_12865) - 2749817..2751190 (+) 1374 WP_024701129.1 L-cystine transporter -
  AL464_RS14255 (AL464_12870) sbcB 2751346..2752767 (+) 1422 WP_025605651.1 exodeoxyribonuclease I Machinery gene
  AL464_RS14260 (AL464_12875) - 2752823..2753197 (+) 375 WP_005455074.1 CidA/LrgA family protein -
  AL464_RS14265 (AL464_12880) - 2753199..2753876 (+) 678 WP_005454891.1 LrgB family protein -
  AL464_RS14270 (AL464_12885) cdd 2754240..2755127 (+) 888 WP_021822781.1 cytidine deaminase -
  AL464_RS14275 (AL464_12890) purT 2755275..2756450 (+) 1176 WP_029804700.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  AL464_RS14280 (AL464_12895) - 2756552..2757202 (-) 651 WP_029804699.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54631.95 Da        Isoelectric Point: 4.9813

>NTDB_id=167985 AL464_RS14255 WP_025605651.1 2751346..2752767(+) (sbcB) [Vibrio parahaemolyticus strain ATCC 17802]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=167985 AL464_RS14255 WP_025605651.1 2751346..2752767(+) (sbcB) [Vibrio parahaemolyticus strain ATCC 17802]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCTGAGCCT
GAGTTTATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGATCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTGTCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGGTTCTTCTCTCCAGCTG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797

Multiple sequence alignment