Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   WH25_RS04345 Genome accession   NZ_CP017295
Coordinates   894103..895761 (+) Length   552 a.a.
NCBI ID   WP_046165877.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 889103..900761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS04315 (WH25_04315) - 889463..890305 (+) 843 WP_046165882.1 NAD(P)H-hydrate dehydratase -
  WH25_RS04320 (WH25_04320) xseA 890461..891801 (+) 1341 WP_046165881.1 exodeoxyribonuclease VII large subunit -
  WH25_RS04325 (WH25_04325) - 891779..891991 (+) 213 WP_008809086.1 exodeoxyribonuclease VII small subunit -
  WH25_RS04330 (WH25_04330) - 891988..892863 (+) 876 WP_046165880.1 polyprenyl synthetase family protein -
  WH25_RS04335 (WH25_04335) - 892856..893671 (+) 816 WP_046165879.1 TlyA family RNA methyltransferase -
  WH25_RS04340 (WH25_04340) - 893664..894095 (+) 432 WP_046165878.1 arginine repressor -
  WH25_RS04345 (WH25_04345) recN 894103..895761 (+) 1659 WP_046165877.1 DNA repair protein RecN Machinery gene
  WH25_RS04350 (WH25_04350) - 895799..896527 (+) 729 WP_046165876.1 metallophosphoesterase family protein -
  WH25_RS04355 (WH25_04355) - 896591..897424 (+) 834 WP_046165875.1 DegV family protein -
  WH25_RS04360 (WH25_04360) - 897569..897844 (+) 276 WP_008809079.1 HU family DNA-binding protein -
  WH25_RS04365 (WH25_04365) perR 898144..898614 (+) 471 WP_045634688.1 peroxide-responsive transcriptional repressor PerR -
  WH25_RS04370 (WH25_04370) - 898776..899468 (+) 693 WP_008809077.1 phosphoglycerate mutase -
  WH25_RS04375 (WH25_04375) - 899579..899794 (+) 216 WP_045634687.1 YozE family protein -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62399.46 Da        Isoelectric Point: 4.5578

>NTDB_id=167984 WH25_RS04345 WP_046165877.1 894103..895761(+) (recN) [Streptococcus gordonii strain IE35]
MLLEISIKNFAIIEEISLHFDQGMTVLTGETGAGKSIIIDAMNMMLGSRATTDVIRHGATKAEIEGLFSLENSSAIEAIF
EEQGLELTDELIIRREILQNGRSVSRVNGQLVNLSVLKAIGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDEDFVALKAF
YQETFDHYRQLRKQVLTLHKNQEEHKARIEMLEFQMAEIDSASLKTGEDKALHQERDRLLNHKLIADTLTNAYAMLDNED
FSSLANVRSAMNDMESIEEYDPIYKELSSSLSETYYVLEDVTKRLEDILDGLDFDGNRLMQVESRLDLINSITRKYGGQV
DDVLEYFSQISKEYQLLTGSHSSSEDLEAELKELEKRLVDLAGQLSQARHELAKQLESEIKQELQDLYMEKANFQVQFNK
SKFNREGNEQVEFYISTNPGENFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIS
SNGQVLAISHLPQVIAIADNQFFIEKISDENSTVSTVRLLDFDERVEEIAKMLAGENVTEAALTQARELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=167984 WH25_RS04345 WP_046165877.1 894103..895761(+) (recN) [Streptococcus gordonii strain IE35]
ATGTTATTAGAAATTTCTATAAAAAACTTTGCTATTATTGAAGAAATCTCTCTTCATTTTGACCAAGGGATGACAGTCCT
GACCGGCGAAACTGGGGCAGGAAAGTCTATCATTATCGATGCTATGAATATGATGCTGGGTAGCCGTGCTACTACAGATG
TTATTCGTCATGGAGCTACTAAGGCAGAAATTGAAGGATTGTTTTCATTGGAGAATAGCTCAGCTATAGAAGCAATTTTT
GAAGAGCAGGGCTTGGAATTGACTGATGAGCTTATTATCCGCCGAGAAATTCTGCAAAATGGTCGCAGTGTCAGCCGGGT
TAATGGACAGTTAGTTAACCTATCAGTTTTGAAGGCTATTGGTCAACATTTAGTAGATATTCATGGTCAACACGATCAGG
AAGAATTAATGCGCCCTCAGCTTCATATAGCCATGCTGGACGAGTTTGGAGATGAGGATTTCGTGGCCTTGAAAGCTTTC
TATCAAGAAACCTTTGATCACTATCGTCAGCTTCGCAAACAGGTTCTGACCTTGCATAAAAATCAAGAGGAGCATAAGGC
TCGCATTGAAATGCTAGAATTTCAGATGGCTGAAATTGATAGTGCTTCCTTGAAAACTGGTGAAGACAAAGCTCTCCACC
AAGAACGTGATCGCTTACTCAATCACAAGCTGATTGCTGATACCTTGACCAATGCATACGCTATGTTGGATAACGAGGAT
TTTTCTAGTTTGGCTAATGTGCGTTCAGCTATGAACGATATGGAGTCTATTGAAGAATATGACCCAATATATAAGGAATT
ATCTTCTAGTCTTTCAGAGACCTATTACGTTCTGGAAGACGTGACCAAACGGTTGGAAGACATTTTAGATGGACTGGATT
TTGATGGCAACCGCCTGATGCAGGTTGAAAGTCGTTTAGATTTAATTAACAGTATCACTCGAAAATATGGTGGCCAAGTA
GATGATGTTCTAGAATATTTTTCGCAAATTTCGAAAGAGTACCAGCTACTGACAGGTAGTCATTCATCTTCTGAAGATTT
AGAGGCAGAACTTAAAGAGTTAGAAAAGCGGTTGGTGGATTTGGCTGGACAGCTTAGCCAAGCAAGGCATGAGTTGGCTA
AACAACTTGAGTCGGAGATTAAGCAGGAACTGCAAGATCTCTATATGGAAAAAGCGAATTTTCAAGTTCAATTTAACAAG
AGCAAGTTTAACCGTGAAGGTAATGAGCAAGTTGAGTTTTATATTTCAACTAATCCTGGAGAAAACTTTAAGCCTTTAGT
TAAGGTTGCATCAGGTGGAGAATTATCTCGTTTAATGCTTGCAATTAAATCAGCTTTCTCTCGGAAAGAAGGAAAGACTA
GTATAGTCTTTGACGAAGTTGATACAGGAGTTTCGGGTCGGGTAGCCCAAGCTATCGCACAAAAAATCCATAAGATTAGC
AGTAATGGTCAGGTTTTAGCAATCTCTCATCTGCCACAAGTCATTGCCATTGCAGATAACCAATTCTTTATTGAAAAAAT
TTCTGATGAAAATTCTACTGTTTCAACTGTTCGTCTCTTGGACTTCGATGAGCGAGTGGAAGAAATTGCTAAGATGTTAG
CTGGTGAAAATGTAACAGAAGCCGCTTTGACCCAGGCGCGTGAATTATTAAAGAAATAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

45.789

100

0.473