Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   WH25_RS03830 Genome accession   NZ_CP017295
Coordinates   802789..803271 (-) Length   160 a.a.
NCBI ID   WP_046165163.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 797789..808271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS03800 (WH25_03800) recU 797996..798598 (-) 603 WP_008808581.1 Holliday junction resolvase RecU Machinery gene
  WH25_RS03805 (WH25_03805) - 798664..799191 (+) 528 WP_046165161.1 DUF1273 domain-containing protein -
  WH25_RS03810 (WH25_03810) gpsB 799261..799611 (+) 351 WP_012000085.1 cell division regulator GpsB -
  WH25_RS03820 (WH25_03820) - 800152..801318 (+) 1167 WP_046165162.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  WH25_RS03825 (WH25_03825) - 801321..802727 (+) 1407 WP_046165200.1 cell division site-positioning protein MapZ family protein -
  WH25_RS03830 (WH25_03830) luxS 802789..803271 (-) 483 WP_046165163.1 S-ribosylhomocysteine lyase Regulator
  WH25_RS03835 (WH25_03835) - 803503..805110 (+) 1608 WP_045772969.1 ribonuclease Y -
  WH25_RS03840 (WH25_03840) gmk 805225..805851 (+) 627 WP_045505966.1 guanylate kinase -
  WH25_RS03845 (WH25_03845) rpoZ 805876..806190 (+) 315 WP_008808589.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17948.55 Da        Isoelectric Point: 5.2546

>NTDB_id=167974 WH25_RS03830 WP_046165163.1 802789..803271(-) (luxS) [Streptococcus gordonii strain IE35]
MSKEVIVESFELDHTIVKAPYVRLIGEESGPKGDVISNFDIRLVQPNEDSIPTAGLHTIEHLLAMLIRKRIDGMIDCSPF
GCRTGFHMIVWGRHTPSEIAQVIKSCLEEIAETTTWEDVPGTTIESCGNYKDHSLFSAKEWAKLILKQGISDNAFERHVI

Nucleotide


Download         Length: 483 bp        

>NTDB_id=167974 WH25_RS03830 WP_046165163.1 802789..803271(-) (luxS) [Streptococcus gordonii strain IE35]
ATGTCTAAAGAAGTTATTGTTGAAAGTTTCGAGCTTGATCACACCATCGTTAAGGCCCCTTATGTACGACTCATTGGAGA
AGAAAGCGGACCAAAAGGAGATGTTATTTCTAATTTTGATATCCGACTTGTCCAGCCCAATGAAGATTCCATTCCAACTG
CAGGACTCCATACCATTGAACACCTGCTAGCAATGCTTATCCGTAAACGTATTGATGGAATGATTGATTGCTCCCCTTTT
GGTTGCCGAACTGGTTTCCATATGATCGTGTGGGGCCGTCATACCCCATCTGAGATTGCCCAGGTGATCAAATCATGCCT
TGAAGAAATCGCTGAAACTACTACTTGGGAGGACGTCCCTGGAACTACGATTGAGTCTTGCGGAAACTATAAAGATCACA
GCCTCTTTTCTGCCAAGGAGTGGGCTAAGTTAATCCTCAAACAAGGCATCTCGGATAATGCTTTCGAACGCCATGTCATT
TGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

38.816

95

0.369

Multiple sequence alignment