Detailed information NTG0167974

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AL464_RS07335
• Genome accession: NZ_CP014046
• Coordinates: 1418591..1419580 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain ATCC 17802
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1413591..1424580

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL464_RS07305 (AL464_06775)	ispD	1413872..1414576 (+)	705	WP_005455574.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AL464_RS07310 (AL464_06780)	ispF	1414594..1415070 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AL464_RS07315 (AL464_06785)	truD	1415117..1416160 (+)	1044	WP_029804969.1	tRNA pseudouridine(13) synthase TruD	-
AL464_RS07320 (AL464_06790)	surE	1416160..1416936 (+)	777	WP_029804971.1	5'/3'-nucleotidase SurE	-
AL464_RS07325 (AL464_06795)	-	1416936..1417562 (+)	627	WP_029804973.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AL464_RS07330 (AL464_06800)	-	1417577..1418500 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
AL464_RS07335 (AL464_06805)	rpoS	1418591..1419580 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
AL464_RS07340 (AL464_06810)	mutS	1419659..1422220 (-)	2562	WP_029804975.1	DNA mismatch repair protein MutS	-
AL464_RS07345 (AL464_06815)	pncC	1422305..1422787 (+)	483	WP_025795578.1	nicotinamide-nucleotide amidase	-
AL464_RS07350 (AL464_06820)	recA	1422988..1424031 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=167974 AL464_RS07335 WP_005478537.1 1418591..1419580(+) (rpoS) [Vibrio parahaemolyticus strain ATCC 17802]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=167974 AL464_RS07335 WP_005478537.1 1418591..1419580(+) (rpoS) [Vibrio parahaemolyticus strain ATCC 17802]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGTCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851