Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   WH25_RS01085 Genome accession   NZ_CP017295
Coordinates   206511..207293 (+) Length   260 a.a.
NCBI ID   WP_046164789.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 201511..212293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS01065 (WH25_01065) rplI 203095..203547 (+) 453 WP_011999581.1 50S ribosomal protein L9 -
  WH25_RS01070 (WH25_01070) dnaB 203574..204929 (+) 1356 WP_008808062.1 replicative DNA helicase -
  WH25_RS01075 (WH25_01075) - 204931..205218 (+) 288 WP_046164787.1 Veg family protein -
  WH25_RS01080 (WH25_01080) - 205346..206533 (+) 1188 WP_046164788.1 pyridoxal phosphate-dependent aminotransferase -
  WH25_RS01085 (WH25_01085) recO 206511..207293 (+) 783 WP_046164789.1 DNA repair protein RecO Machinery gene
  WH25_RS01090 (WH25_01090) plsX 207290..208291 (+) 1002 WP_045772604.1 phosphate acyltransferase PlsX -
  WH25_RS01095 (WH25_01095) - 208288..208527 (+) 240 WP_008808067.1 acyl carrier protein -
  WH25_RS01100 (WH25_01100) purC 208680..209387 (+) 708 WP_045505033.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29991.29 Da        Isoelectric Point: 5.1510

>NTDB_id=167962 WH25_RS01085 WP_046164789.1 206511..207293(+) (recO) [Streptococcus gordonii strain IE35]
MMQSITSKALVLYNRNFREDDKLVKIFTEQAGKRMFFVKHATNSKLSPVIQPLTLANLLMKVNDDGLSYIQDYQDVQPFT
RINSDLFIMAYATYVAALADASIPDSQPDAALFAFLTKTLELMEDGLDHEILTNIFEVQILSRFGVSLNFHECVFCHRTG
LPFDFSFKFNGVLCPDHYHEDDRRCHLHPNIPFLLDQFQAVEYSTLETISLKAEIKQQLREFIDQIYDDYVGIHLKSKKF
IDSLGDWGSILKDKENKESI

Nucleotide


Download         Length: 783 bp        

>NTDB_id=167962 WH25_RS01085 WP_046164789.1 206511..207293(+) (recO) [Streptococcus gordonii strain IE35]
ATGATGCAGTCCATCACGAGTAAGGCGCTGGTCCTCTATAATCGAAACTTTCGTGAAGACGACAAATTAGTAAAAATCTT
TACAGAACAGGCTGGCAAGCGTATGTTTTTCGTGAAACATGCCACCAACTCTAAGCTGAGTCCTGTTATTCAGCCCCTTA
CCTTGGCAAATCTGCTTATGAAGGTGAATGATGATGGTCTGAGTTATATTCAGGATTATCAGGATGTCCAGCCTTTTACT
CGAATTAATAGCGATTTGTTCATCATGGCCTATGCGACCTATGTAGCCGCTTTGGCAGACGCTAGTATTCCGGACAGTCA
ACCAGATGCTGCTCTTTTTGCTTTTCTGACAAAAACCTTGGAGCTAATGGAAGACGGTTTAGACCATGAGATTTTGACAA
ATATTTTTGAAGTTCAGATTTTGTCCCGTTTTGGTGTTTCTCTGAATTTCCATGAATGTGTCTTTTGTCATCGAACTGGA
CTACCTTTTGATTTTTCCTTTAAATTCAATGGTGTCCTCTGTCCAGACCACTATCATGAAGACGATCGTCGCTGTCATCT
TCATCCTAATATCCCATTTTTACTTGATCAATTTCAGGCAGTGGAATATAGCACTCTGGAAACTATTTCACTAAAAGCAG
AAATTAAGCAACAACTGCGCGAATTTATAGATCAAATTTACGACGATTATGTTGGAATTCATTTGAAATCAAAGAAATTC
ATTGATTCTCTGGGAGACTGGGGAAGTATTTTAAAAGATAAAGAAAATAAGGAGTCAATATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(2-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

74.51

98.077

0.731