Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AL545_RS23040 Genome accession   NZ_CP014045
Coordinates   3062635..3063663 (+) Length   342 a.a.
NCBI ID   WP_254901949.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FDAARGOS_114     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3057635..3068663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL545_RS23015 (AL545_23015) rplC 3058197..3058826 (-) 630 WP_005379555.1 50S ribosomal protein L3 -
  AL545_RS23020 (AL545_23020) rpsJ 3058841..3059152 (-) 312 WP_004410492.1 30S ribosomal protein S10 -
  AL545_RS23025 (AL545_23025) rpmE 3059609..3059830 (-) 222 WP_005379546.1 50S ribosomal protein L31 -
  AL545_RS23035 (AL545_23035) priA 3060127..3062331 (+) 2205 WP_017820298.1 primosomal protein N' -
  AL545_RS23040 (AL545_23040) cytR 3062635..3063663 (+) 1029 WP_254901949.1 DNA-binding transcriptional regulator CytR Regulator
  AL545_RS23045 (AL545_23045) ftsN 3063891..3064439 (+) 549 WP_017820300.1 cell division protein FtsN -
  AL545_RS23050 (AL545_23050) hslV 3064555..3065106 (+) 552 WP_017820301.1 ATP-dependent protease subunit HslV -
  AL545_RS23055 (AL545_23055) hslU 3065130..3066461 (+) 1332 WP_005397950.1 HslU--HslV peptidase ATPase subunit -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37765.46 Da        Isoelectric Point: 6.4948

>NTDB_id=167945 AL545_RS23040 WP_254901949.1 3062635..3063663(+) (cytR) [Vibrio alginolyticus strain FDAARGOS_114]
MNERLKTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPY
FSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELEL
PTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLE
LPEPPTAIFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVH
SGSRLLETNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=167945 AL545_RS23040 WP_254901949.1 3062635..3063663(+) (cytR) [Vibrio alginolyticus strain FDAARGOS_114]
ATAAATGAGAGGTTAAAAACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCG
AGCCTTAATGAATCCAGAGAAAGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTC
CAAACTCATTAGCGCGTAACTTACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTAT
TTTTCTGAAATTATTCGCGGTATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACA
GAAGAAACGCGAAAGCTCTTTCGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTAC
CATTCGATGTCAGTAAGCCAGAGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGCTCGAGCTT
CCGACAGTACATATTGATAACCTGACCTCAGCATTTGAAGCGGTGAATTACCTGACTCAATTAGGTCATAAACGCATTGC
TCAAATCTCTGGACCAGATACAGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCA
TCAATAAAGATCCACAATATAGTGTCATTACTGAGTTTTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAA
TTGCCAGAACCACCAACGGCTATTTTCTGCCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGG
CTTACGAGTACCGCAAGATCTCTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCA
CCATCTCTCAACCTCGCTATGAGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCAT
TCAGGCTCGCGTCTGCTTGAAACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-335)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

97.935

99.123

0.971
  cytR Vibrio cholerae C6706

89.521

97.661

0.874

Multiple sequence alignment