Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AL545_RS17960 Genome accession   NZ_CP014045
Coordinates   1987388..1988809 (+) Length   473 a.a.
NCBI ID   WP_017820876.1    Uniprot ID   A0A7Y0MUH5
Organism   Vibrio alginolyticus strain FDAARGOS_114     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1982388..1993809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL545_RS17940 (AL545_17940) - 1982869..1983645 (-) 777 WP_031777196.1 adenosylcobinamide-GDP ribazoletransferase -
  AL545_RS17945 (AL545_17945) cobT 1983675..1984718 (-) 1044 WP_021707632.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  AL545_RS17950 (AL545_17950) - 1984967..1985656 (+) 690 WP_017820877.1 NAD(P)H-binding protein -
  AL545_RS17955 (AL545_17955) - 1985857..1987230 (+) 1374 WP_005377885.1 L-cystine transporter -
  AL545_RS17960 (AL545_17960) sbcB 1987388..1988809 (+) 1422 WP_017820876.1 exodeoxyribonuclease I Machinery gene
  AL545_RS17965 (AL545_17965) - 1988865..1989239 (+) 375 WP_005377887.1 CidA/LrgA family protein -
  AL545_RS17970 (AL545_17970) - 1989241..1989918 (+) 678 WP_017820875.1 LrgB family protein -
  AL545_RS17975 (AL545_17975) cdd 1990350..1991237 (+) 888 WP_005377892.1 cytidine deaminase -
  AL545_RS17980 (AL545_17980) purT 1991381..1992556 (+) 1176 WP_021033842.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  AL545_RS17985 (AL545_17985) - 1992629..1993279 (-) 651 WP_021707633.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54446.62 Da        Isoelectric Point: 4.8633

>NTDB_id=167935 AL545_RS17960 WP_017820876.1 1987388..1988809(+) (sbcB) [Vibrio alginolyticus strain FDAARGOS_114]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHTELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=167935 AL545_RS17960 WP_017820876.1 1987388..1988809(+) (sbcB) [Vibrio alginolyticus strain FDAARGOS_114]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACACTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCTTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGGTTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGTCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACGAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCAGAGTCT
ATTGGCATTGATCGCCAACAATGTCTCGCCAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCCGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAGCTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGT
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y0MUH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793

Multiple sequence alignment