Detailed information NTG0167923

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AL545_RS10975
• Genome accession: NZ_CP014045
• Coordinates: 567475..568461 (+)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain FDAARGOS_114
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 562475..573461

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL545_RS10940 (AL545_10945)	ftsB	562485..562766 (+)	282	WP_017821626.1	cell division protein FtsB	-
AL545_RS10945 (AL545_10950)	ispD	562768..563475 (+)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AL545_RS10950 (AL545_10955)	ispF	563490..563966 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AL545_RS10955 (AL545_10960)	truD	564012..565055 (+)	1044	WP_017821624.1	tRNA pseudouridine(13) synthase TruD	-
AL545_RS10960 (AL545_10965)	surE	565055..565831 (+)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
AL545_RS10965 (AL545_10970)	-	565831..566457 (+)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AL545_RS10970 (AL545_10975)	-	566471..567394 (+)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
AL545_RS10975 (AL545_10980)	rpoS	567475..568461 (+)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
AL545_RS10980 (AL545_10985)	mutS	568544..571105 (-)	2562	WP_017821623.1	DNA mismatch repair protein MutS	-
AL545_RS10985 (AL545_10990)	pncC	571190..571672 (+)	483	WP_017821622.1	nicotinamide-nucleotide amidase	-
AL545_RS10990 (AL545_10995)	recA	571873..572916 (+)	1044	WP_005380874.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=167923 AL545_RS10975 WP_005380887.1 567475..568461(+) (rpoS) [Vibrio alginolyticus strain FDAARGOS_114]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=167923 AL545_RS10975 WP_005380887.1 567475..568461(+) (rpoS) [Vibrio alginolyticus strain FDAARGOS_114]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAGTTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATTTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACGTGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854