Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AL543_RS16250 Genome accession   NZ_CP014043
Coordinates   1972017..1973441 (-) Length   474 a.a.
NCBI ID   WP_061052456.1    Uniprot ID   -
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1967017..1978441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS16225 (AL543_15460) purT 1967539..1968714 (-) 1176 WP_061052451.1 phosphoribosylglycinamide formyltransferase 2 -
  AL543_RS16230 (AL543_15465) - 1968869..1969744 (-) 876 WP_061052452.1 AEC family transporter -
  AL543_RS16235 (AL543_15470) cdd 1969892..1970779 (-) 888 WP_061052453.1 cytidine deaminase -
  AL543_RS16240 (AL543_15475) - 1970948..1971622 (-) 675 WP_061052454.1 LrgB family protein -
  AL543_RS16245 (AL543_15480) - 1971613..1971987 (-) 375 WP_061052455.1 CidA/LrgA family protein -
  AL543_RS16250 (AL543_15485) sbcB 1972017..1973441 (-) 1425 WP_061052456.1 exodeoxyribonuclease I Machinery gene
  AL543_RS16255 (AL543_15490) - 1973589..1974962 (-) 1374 WP_061052457.1 L-cystine transporter -
  AL543_RS16260 (AL543_15495) msrB 1975276..1975725 (+) 450 WP_061052458.1 peptide-methionine (R)-S-oxide reductase MsrB -
  AL543_RS16265 (AL543_15500) cobT 1976170..1977195 (+) 1026 WP_061052459.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  AL543_RS16270 (AL543_15505) - 1977195..1977980 (+) 786 WP_061052460.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54783.09 Da        Isoelectric Point: 5.7918

>NTDB_id=167897 AL543_RS16250 WP_061052456.1 1972017..1973441(-) (sbcB) [Vibrio mimicus strain FDAARGOS_112]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSLGLPEP
EFISRIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQRGNSRWDLLDVIRACHALRPEGIEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAE
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQLYEGFFSPADRAAMEIIRTTSPDNLGSLDIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLAH

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=167897 AL543_RS16250 WP_061052456.1 1972017..1973441(-) (sbcB) [Vibrio mimicus strain FDAARGOS_112]
ATGCAGCAAGAACACCAGCCCACATTTTTCTTTTTTGACTACGAGACTTGGGGAGTGAATCCCGCCAAGGATCGCCCTAG
TCAGTTTGCGGGTGTTCGTACCGATATGGATTTCAACATCATTGGTGAGCCGCTGGTGATTTACTGTCAATTACCAAATG
ATTATTTACCCGCTCCTGAAGCGGCGCTGATCACCGGAATTACTCCACAGAAAGCGAATAGTTTAGGCTTACCAGAGCCA
GAATTTATCTCCCGCATTCATGCTGAACTCTCCACGCCAAACACCACCAGCTTAGGCTACAACAGCATCCGTTTTGACGA
TGAAGTGACACGATACACCTGCTATCGCAACTTTATCGACCCGTATGCATGGAGCTGGCAGCGCGGTAATTCCCGTTGGG
ATCTGCTGGATGTGATTCGAGCTTGCCATGCTCTGCGCCCTGAAGGCATCGAATGGCCAGAGAATGATGAAGGCTTTACT
AGCTTTAAGTTAGAACACCTTTCTGTCGCCAACGGCATTGAACACAGTAACGCACACGATGCGATGGCTGACGTGATTGC
TACCATTGAATTGGCTAAAAAGATCAAAGCCGCGCAGCCTAAGTTGTTCGATTATTTCTTCAACATGCGCCACAAACGCA
AGCTGACTGAGCTGATTGATATCGTTAACCAAACCCCGCTGATGCATGTTTCCGGTATGCTTGGCCGTGAACGTCAGTAC
ACCAGTTGGATTGTGCCGATTGCTTGGCATCCTACCAACCAAAATGCGGTCATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCTCTGTTTGATCTTGATGCAGAAGCGTTGCAAGCACGTCTCTATACTCGTTATGAAGATTTAGCGCCCGATGAACTGC
CCGTTCCGGTGAAGTTAGTGCATCTCAACAAATGTCCTATTCTTGCTCCCGCCAAGACTCTGACCGCAGAGAATGCTGAA
AAGATTGGTATTGATCGCGAGCAGTGTCTTGCTCACTTAAATGTGATTCGTCAGCATCCAGAAATTCGTGAAAAGCTGGT
GACGGTATTCAGTCAAGAGCGCGAGTTTGCCAAAGAAAACAATGTGGATAGCCAATTGTATGAAGGGTTCTTCTCGCCTG
CCGATCGTGCGGCGATGGAGATCATTCGCACCACATCACCGGATAATCTTGGCAGCTTAGACATCCAAGTGGCGGATAAA
CGTATCGAACCTCTGTTGTTCCGTTACCGCGCTCGCCATTACCCACATACCTTAACCGATGCCGAGCAGCGCCGCTGGGC
AGCGCATTGTCGTGACTATTTTGAACGTAACCTTGAAAGCTATATGCTGAATTTGGAAAACTTAGTTCATGAACATCAGA
CTGACGAAAAGAAAATGGCGATTTTAAAATCCGTTTACCATTACGTTGAAAAGCTCGCTCACTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

94.08

99.789

0.939

Multiple sequence alignment