Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AL543_RS12665 Genome accession   NZ_CP014043
Coordinates   1212123..1212641 (+) Length   172 a.a.
NCBI ID   WP_001130224.1    Uniprot ID   Q401L3
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1207123..1217641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS12655 (AL543_11915) - 1207528..1210383 (+) 2856 WP_061052080.1 M16 family metallopeptidase -
  AL543_RS12660 (AL543_11920) gshA 1210495..1212069 (+) 1575 WP_005526829.1 glutamate--cysteine ligase -
  AL543_RS12665 (AL543_11925) luxS 1212123..1212641 (+) 519 WP_001130224.1 S-ribosylhomocysteine lyase Regulator
  AL543_RS12670 (AL543_11930) - 1212741..1214015 (-) 1275 WP_000340995.1 HlyC/CorC family transporter -
  AL543_RS12675 (AL543_11935) - 1214098..1214892 (-) 795 WP_000369274.1 cytochrome C assembly family protein -
  AL543_RS12680 (AL543_11940) ffh 1215105..1216490 (+) 1386 WP_000462724.1 signal recognition particle protein -
  AL543_RS12685 (AL543_11945) rpsP 1216729..1216977 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  AL543_RS12690 (AL543_11950) rimM 1217005..1217559 (+) 555 WP_000061902.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19005.86 Da        Isoelectric Point: 5.5455

>NTDB_id=167889 AL543_RS12665 WP_001130224.1 1212123..1212641(+) (luxS) [Vibrio mimicus strain FDAARGOS_112]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTLPNKDILSERGIHTLEHLYAGFMRAHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLEEAKAIAQKVIAAGISVNRNDDLA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=167889 AL543_RS12665 WP_001130224.1 1212123..1212641(+) (luxS) [Vibrio mimicus strain FDAARGOS_112]
ATGCCATTATTAGACAGCTTCACCGTCGATCATACTCGTATGAATGCGCCTGCAGTGCGTGTTGCGAAGACCATGCAAAC
CCCAAAAGGCGATACCATTACGGTATTTGATTTGCGTTTTACTCTGCCAAACAAAGATATTTTGTCTGAGCGCGGTATTC
ACACTCTGGAGCATCTGTACGCGGGCTTTATGCGTGCTCACCTTAATGGAAGCCAAGTTGAGATCATCGATATTTCTCCT
ATGGGCTGTCGTACTGGCTTCTATATGAGTTTGATCGGTGCGCCAACTGAGCAGCAAGTGGCACAAGCTTGGTTAGCGGC
AATGCAAGATGTGTTGAAAGTGGAAAGCCAAGATAAGATTCCAGAGCTAAACGAATACCAGTGCGGTACAGCAGCGATGC
ATTCTTTGGAAGAAGCCAAAGCGATTGCGCAGAAAGTGATTGCGGCAGGTATTTCAGTTAACCGTAATGATGACTTGGCA
CTGCCTGAGTCAATGTTGAATGAGCTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q401L3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

95.93

100

0.959

Multiple sequence alignment