Detailed information NTG0167886

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AL543_RS12525
• Genome accession: NZ_CP014043
• Coordinates: 1185259..1186269 (+)
• Length: 336 a.a.
• NCBI ID: WP_061052070.1
• Uniprot ID: -
• Organism: Vibrio mimicus strain FDAARGOS_112
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1180259..1191269

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL543_RS12490 (AL543_11750)	ftsB	1180316..1180600 (+)	285	WP_001263188.1	cell division protein FtsB	-
AL543_RS12495 (AL543_11755)	ispD	1180597..1181295 (+)	699	WP_061052065.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AL543_RS12500 (AL543_11760)	ispF	1181292..1181768 (+)	477	WP_061052066.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AL543_RS12505 (AL543_11765)	truD	1181798..1182883 (+)	1086	WP_061052067.1	tRNA pseudouridine(13) synthase TruD	-
AL543_RS12510 (AL543_11770)	surE	1182885..1183637 (+)	753	WP_061052068.1	5'/3'-nucleotidase SurE	-
AL543_RS12515 (AL543_11775)	-	1183630..1184256 (+)	627	WP_000002984.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AL543_RS12520 (AL543_11780)	nlpD	1184256..1185185 (+)	930	WP_061052069.1	murein hydrolase activator NlpD	-
AL543_RS12525 (AL543_11785)	rpoS	1185259..1186269 (+)	1011	WP_061052070.1	RNA polymerase sigma factor RpoS	Regulator
AL543_RS12530 (AL543_11790)	mutS	1186345..1188933 (-)	2589	WP_061052071.1	DNA mismatch repair protein MutS	-
AL543_RS12535 (AL543_11795)	cysM	1189262..1190149 (-)	888	WP_061052072.1	cysteine synthase CysM	-

Sequence

Protein

• Length: 336 a.a.
• Molecular weight: 38612.46 Da
• Isoelectric Point: 4.3159

>NTDB_id=167886 AL543_RS12525 WP_061052070.1 1185259..1186269(+) (rpoS) [Vibrio mimicus strain FDAARGOS_112]
MSVSNTVTKVEEFDFEDEALEVLEADDELSSDEELVTAEGASDEVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDKPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSNNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEVLFNVEYDVN

Nucleotide

• Length: 1011 bp

>NTDB_id=167886 AL543_RS12525 WP_061052070.1 1185259..1186269(+) (rpoS) [Vibrio mimicus strain FDAARGOS_112]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTTGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAGCGGATGA
TGAGCTCTCGAGTGATGAAGAATTAGTGACCGCTGAAGGGGCAAGTGATGAAGTTCGCGAAGAGTTTGATGCTTCTGCGA
AAAGTCTCGATGCCACACAAATGTATCTCAGTGAAATTGGTTTCTCACCTCTACTGACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCTTTACGTGGCGATGAAGCAGCACGTAAGCGCATGATTGAAAGTAACTTGCGTTTAGTCGTTAAAATTTC
ACGTCGCTACAGCAATCGTGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAACTTAGGTCTCATTCGTGCGGTTGAAA
AATTCGATCCAGAACGTGGTTTCCGCTTTTCAACTTACGCGACATGGTGGATCCGTCAAACCATCGAACGTGCGCTGATG
AACCAAACTCGCACCATTCGTCTACCGATTCATGTTGTCAAAGAATTGAACATTTACCTGCGTACTGCTCGTGAATTGTC
ACAACGTCTTGACCACGAACCTACGCCAGAAGAAATCGCGCTCGAGCTCGATAAACCGGTTGATGATGTAACGAAGATGC
TGCGTCTCAACGAACGTATCAGCTCTGTTGATACACCGATTGGCGGCGATGGTGATAAAGCACTGCTGGATATCTTGCCG
GACTCCAATAATGCGGATCCTGAGTTTTCGACTCAAGATGATGATATTCGTGAATCTCTGCTCAACTGGCTTGATGAACT
CAATCCAAAACAGAAAGAAGTTCTTGCTCGTCGTTTTGGTTTGTTGGGTTATGAGCCCTCCACATTGGAAGAAGTAGGAC
GTGAGATCAATCTGACTCGTGAGCGTGTACGCCAAATTCAGGTAGAAGGGTTACGCCGTCTGCGTGAGATCTTGGTGAAA
CAAGGTTTGAATATGGAAGTTCTGTTTAACGTCGAATACGACGTCAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-248)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	97.006	99.405	0.964