Detailed information NTG0167874

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AL543_RS08965
• Genome accession: NZ_CP014043
• Coordinates: 457381..458388 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio mimicus strain FDAARGOS_112
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 452381..463388

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL543_RS08940 (AL543_08205)	rraA	452978..453493 (-)	516	WP_000456240.1	ribonuclease E activity regulator RraA	-
AL543_RS08945 (AL543_08210)	-	453568..454485 (-)	918	WP_061051707.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AL543_RS08950 (AL543_08215)	hslU	454592..455923 (-)	1332	WP_001293363.1	HslU--HslV peptidase ATPase subunit	-
AL543_RS08955 (AL543_08220)	hslV	455966..456517 (-)	552	WP_000208246.1	ATP-dependent protease subunit HslV	-
AL543_RS08960 (AL543_08225)	-	456660..457211 (-)	552	WP_005524321.1	SPOR domain-containing protein	-
AL543_RS08965 (AL543_08230)	cytR	457381..458388 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
AL543_RS08970 (AL543_08235)	priA	458694..460898 (-)	2205	WP_061051708.1	primosomal protein N'	-
AL543_RS08975 (AL543_08240)	rpmE	461151..461369 (+)	219	WP_000643443.1	50S ribosomal protein L31	-
AL543_RS08985 (AL543_08245)	-	461679..462956 (+)	1278	WP_061051709.1	malic enzyme-like NAD(P)-binding protein	-
AL543_RS08990 (AL543_08250)	metJ	463056..463373 (-)	318	WP_061051710.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=167874 AL543_RS08965 WP_000224452.1 457381..458388(-) (cytR) [Vibrio mimicus strain FDAARGOS_112]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=167874 AL543_RS08965 WP_000224452.1 457381..458388(-) (cytR) [Vibrio mimicus strain FDAARGOS_112]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCCGGAGTCTCAACCGCGACCGTGTCTCGTGCGTTGATGAACCCTGAAAA
AGTCTCCTCATCAACTCGTAAACGAGTGGAAGAGGCGGTGCTGGAAGCGGGTTACTCACCAAATTCTTTAGCGCGCAATT
TGCGCCGCAATGAGTCAAAAACCATCGTTGCTATTGTTCCTGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCGGCGATGGAGCACGGCTATTTGGTGTTGTTGGGTGACAGTGGTCAACAAAAGCGTCGGGAGAATTCCTT
TGTAAACCTTGTGTTTACTAAACAAGCCGATGGCATGTTACTGCTGGGTACAGATTTACCGTTTGATGTGAGTAAGCCTG
AACAGAAAAATCTGCCGCCTATGGTGATGGCGTGTGAATTTGCTCCTGAGCTTGAATTACCGACGGTGCATATCGATAAC
CTGACTTCTGCATTTGAAGCGGTGAACTATCTGACTCAGCTTGGGCATAAGCGCATTGCGCAGATCTCTGGCCCACAACA
TGCGGCATTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACTATGAACCCGACTTACT
GCACTTTTGGTGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGCCAGTTACTGGCGTTGCCAGAGCAACCAACCGCC
ATTTTCTGTCACAATGATACGATGGCGATTGGGGCGATTCAGGAAGCTAAACGACTGGGTCTGCGAGTACCGCAAGATCT
CTCCGTCGTCGGCTTTGATGATATTCAGTTTGCTCAGTACTGTGATCCACCGCTGACCACTATCTCGCAACCTCGTTATG
AAATTGGTCGCCAAGCCATGCTGATGATGTTAGAGCTACTGCGTGGGCATGATGTACGTGCCGGGTCACGTTTGCTTGAA
ACCAAACTCGTGGTACGTGAGAGTGCTGCGCCGCCAAGCAAAAAATAG

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904