Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   AL541_RS21480 Genome accession   NZ_CP014041
Coordinates   922888..923985 (+) Length   365 a.a.
NCBI ID   WP_104980502.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FDAARGOS_110     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 917888..928985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL541_RS21450 (AL541_04315) - 919202..920545 (-) 1344 WP_017635172.1 MATE family efflux transporter -
  AL541_RS21455 (AL541_04320) - 920667..920981 (-) 315 WP_005373603.1 DUF496 family protein -
  AL541_RS21460 (AL541_04325) - 921223..921426 (+) 204 WP_031777159.1 hypothetical protein -
  AL541_RS21465 (AL541_04330) - 921592..922242 (+) 651 WP_054577764.1 YceH family protein -
  AL541_RS21470 (AL541_04335) - 922239..922556 (+) 318 WP_053349265.1 GIY-YIG nuclease family protein -
  AL541_RS21480 (AL541_04345) luxP 922888..923985 (+) 1098 WP_104980502.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  AL541_RS21485 (AL541_04350) luxQ 923985..926561 (+) 2577 WP_104980504.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  AL541_RS21490 (AL541_04355) slyA 926857..927312 (+) 456 WP_017635177.1 transcriptional regulator SlyA -
  AL541_RS21495 (AL541_04360) - 927348..928406 (+) 1059 WP_005373588.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41617.07 Da        Isoelectric Point: 5.9503

>NTDB_id=167854 AL541_RS21480 WP_104980502.1 922888..923985(+) (luxP) [Vibrio alginolyticus strain FDAARGOS_110]
MKKALVFSLISMAAFTPNVQATQVLNGYWAYQEFLDQFPQQKQLTSALAEVVRETPVPVAKDKKRPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEHHQPFLYVGFDHAEGSRELAVEFGKRFPKHSHYSVLYFSEGYISDIRGNTFINQVNRDNQFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGRDDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=167854 AL541_RS21480 WP_104980502.1 922888..923985(+) (luxP) [Vibrio alginolyticus strain FDAARGOS_110]
ATGAAAAAAGCGTTAGTATTCTCCCTGATTTCAATGGCCGCTTTTACGCCGAATGTGCAGGCCACCCAAGTTCTTAATGG
GTATTGGGCATATCAAGAATTTTTAGACCAGTTTCCACAACAGAAGCAGCTAACTAGTGCGTTGGCTGAAGTGGTAAGAG
AAACCCCTGTACCCGTAGCAAAAGACAAAAAGCGTCCACTGAAAATTTCTGTTGTTTATCCAGGGCAGCAGATCTCTGAT
TATTGGATTCGAAACATCGATGCGTTTGAAAAACGCCTAGATAAGCTTGATATCGACTATCAACTAAATCAAGTGTTTAC
TCGTCCTAATGCAGATATAAAGCAGCAAAGTTTGTCTTTAATGGAGGCGCTGAAAAGCAACTCCGATTACTTGATCTTTA
CTCTAGATACCACAAGACATCGTAAGTTTGTTGAGCATGTCTTAGATTCAAAGAAAACCAAGTTAATTTTACAAAATATC
ACCACACCTGTTAGGGATTGGGAACATCATCAGCCGTTTCTTTATGTTGGTTTCGACCACGCAGAAGGAAGTCGTGAATT
GGCCGTTGAGTTTGGCAAGCGTTTCCCTAAACATAGCCACTATAGTGTTCTCTACTTCTCAGAGGGCTACATTAGTGACA
TCAGAGGCAACACTTTTATCAACCAAGTGAACCGCGATAATCAATTTGAACTACAATCTGCTTACTACACCAAAGCAACA
AAGCAATCTGGGTATGAAGCTGCAAAAGCCAGTTTGGAGAAGTATCCGGACGTTGACTTCATTTACGCGTGTTCTACCGA
TGTAGCATTAGGTGCTGTTGACGCTCTTAAAGAGTTAGGTCGTGATGATGTCATGATCAATGGTTGGGGCGGCGGTTCAG
CAGAGTTAGAGGCGCTTTCTAAAGGGGAGTTAGACGTTACCGTTATGCGTATGAACGATGATACAGGTATTGCAATGGCT
GAGGCCATTAAGTGGGATCTAGAAGGAAAGCCAGTTCCCACCGTTTACTCTGGTGATTTTGAAGTCGTTACCAAATCGGA
CTCTCCAGAAAGAATTGAAGCATTAAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644

Multiple sequence alignment