Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   A4W88_RS07780 Genome accession   NZ_CP017275
Coordinates   1508275..1509081 (-) Length   268 a.a.
NCBI ID   WP_056948086.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1398     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1503275..1514081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W88_RS07755 (A4W88_07685) - 1503671..1504102 (+) 432 WP_035146359.1 GNAT family N-acetyltransferase -
  A4W88_RS07760 (A4W88_07690) - 1504178..1504651 (+) 474 WP_011375164.1 hypothetical protein -
  A4W88_RS07765 (A4W88_07695) - 1504793..1506493 (+) 1701 WP_241782132.1 glycosyltransferase family 8 protein -
  A4W88_RS07770 (A4W88_07700) - 1506562..1507098 (-) 537 WP_011375166.1 DUF402 domain-containing protein -
  A4W88_RS07775 (A4W88_07705) mutY 1507185..1508288 (-) 1104 WP_016265509.1 A/G-specific adenine glycosylase -
  A4W88_RS07780 (A4W88_07710) recX 1508275..1509081 (-) 807 WP_056948086.1 recombination regulator RecX Regulator
  A4W88_RS07785 (A4W88_07715) - 1509083..1509262 (-) 180 WP_011375169.1 hypothetical protein -
  A4W88_RS07790 (A4W88_07720) rlmD 1509650..1511041 (+) 1392 WP_251930855.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  A4W88_RS07795 (A4W88_07725) - 1511257..1511763 (-) 507 WP_016265512.1 DUF805 domain-containing protein -
  A4W88_RS07800 (A4W88_07730) - 1511854..1512324 (+) 471 WP_016265513.1 nucleoside 2-deoxyribosyltransferase -
  A4W88_RS07805 (A4W88_07735) - 1512411..1512653 (+) 243 WP_011375173.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31059.95 Da        Isoelectric Point: 6.0698

>NTDB_id=167835 A4W88_RS07780 WP_056948086.1 1508275..1509081(-) (recX) [Latilactobacillus sakei strain TMW 1.1398]
MPQITKITSQKQKGRYNIFIDEQFAFGVTESVLIKFRLAKGLEIDSSLQRDIQKEDDNAKAYQLALNYLSHQLRTEKELT
QYLRDHEITPEGIETSLTKLRELHYLDDQDYADSYVRTVINTSDKGPKVVRQKLIQKGVSANHIDQALTLYTDEEQVTVG
LATAQKLAKKYRHSSFFEQQQKIKQGLMQKGFGGDNLSRIIDELALEEDSDSEADALAALGEKKWRRYRLLESRERRMKM
QQALYRKGFNIDAINRFIDDQEVSDDTE

Nucleotide


Download         Length: 807 bp        

>NTDB_id=167835 A4W88_RS07780 WP_056948086.1 1508275..1509081(-) (recX) [Latilactobacillus sakei strain TMW 1.1398]
ATGCCACAGATTACTAAAATTACCTCACAAAAACAAAAAGGGCGCTATAACATTTTTATCGACGAGCAGTTTGCCTTTGG
GGTGACTGAAAGTGTCTTAATCAAGTTTCGGCTTGCAAAAGGGCTCGAAATCGATAGTAGCTTACAACGTGACATTCAAA
AAGAAGATGACAATGCCAAGGCCTATCAACTGGCCTTGAATTATTTAAGTCACCAATTACGAACGGAAAAAGAATTAACA
CAATACTTGCGTGATCATGAAATTACGCCAGAAGGCATTGAAACCAGTTTGACAAAATTACGCGAACTACATTATTTGGA
TGATCAGGATTACGCGGACAGTTATGTTAGAACGGTGATTAATACTTCGGATAAGGGGCCTAAAGTGGTTCGACAAAAAT
TGATTCAAAAAGGGGTTAGTGCTAATCATATCGATCAAGCATTGACGTTATATACAGATGAAGAACAAGTGACAGTCGGC
TTAGCAACTGCCCAAAAGCTAGCGAAGAAGTACCGCCACAGTTCGTTCTTCGAACAACAGCAAAAGATTAAACAGGGCTT
GATGCAAAAGGGCTTTGGTGGTGATAATTTAAGTCGGATTATTGACGAATTAGCGCTTGAAGAAGACAGTGATAGTGAAG
CAGATGCATTGGCAGCCCTTGGCGAGAAAAAATGGCGCCGTTATCGCCTATTAGAATCGCGCGAGCGGCGGATGAAGATG
CAACAAGCACTTTACCGGAAAGGATTTAATATTGATGCAATCAACCGTTTCATCGACGACCAAGAAGTATCAGATGACAC
CGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(204-260)

RecX family (RecX_HTH2)

(83-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

38.023

98.134

0.373