Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | A4W88_RS07720 | Genome accession | NZ_CP017275 |
| Coordinates | 1494830..1496995 (+) | Length | 721 a.a. |
| NCBI ID | WP_076632333.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain TMW 1.1398 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1489830..1501995
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4W88_RS07700 (A4W88_07630) | - | 1491682..1492122 (-) | 441 | WP_016265501.1 | CopY/TcrY family copper transport repressor | - |
| A4W88_RS07705 (A4W88_07635) | ptsP | 1492272..1493999 (-) | 1728 | WP_162101004.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| A4W88_RS07710 (A4W88_07640) | - | 1493996..1494262 (-) | 267 | WP_004265632.1 | phosphocarrier protein HPr | - |
| A4W88_RS07715 (A4W88_07645) | - | 1494405..1494596 (-) | 192 | WP_011375155.1 | hypothetical protein | - |
| A4W88_RS07720 (A4W88_07650) | clpC | 1494830..1496995 (+) | 2166 | WP_076632333.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| A4W88_RS07725 (A4W88_07655) | - | 1497103..1497399 (+) | 297 | WP_011375157.1 | DUF1827 family protein | - |
| A4W88_RS07730 (A4W88_07660) | - | 1497524..1497946 (+) | 423 | WP_011375158.1 | PPC domain-containing DNA-binding protein | - |
| A4W88_RS07735 (A4W88_07665) | - | 1498153..1499238 (+) | 1086 | WP_016265505.1 | MucBP domain-containing protein | - |
| A4W88_RS07740 (A4W88_07670) | - | 1499351..1500927 (-) | 1577 | Protein_1502 | peptide chain release factor 3 | - |
Sequence
Protein
Download Length: 721 a.a. Molecular weight: 79701.08 Da Isoelectric Point: 5.0555
>NTDB_id=167834 A4W88_RS07720 WP_076632333.1 1494830..1496995(+) (clpC) [Latilactobacillus sakei strain TMW 1.1398]
MLCQNCQKNPATIHLYTSVNGQNQAINLCQNCYQALKQQGMSGQYNDPFGFSNLDELFNAINNPNAERNAANQGPQTQGG
RNGGGNNGQNGESLLSQFGVNLTNLAKGGQIDPVIGRDKEIARVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQKIADG
DVPAKLKDRQVIRLDVVSLVQGTGIRGQFEERMQQLITELKQNKQIILFIDEIHEIVGAGNAEGGMDAGNVLKPALARGE
LQLVGATTNNEFRQIEKDAALARRLQPVAVNEPSVDETVLILKGLQDKYESYHHVHYTDEALKAAAALSSRYIQDRYLPD
KAIDLLDEAGSKKNLTIILMDPKELEAKIKSAEAQKQEALKQEDYEKAATYRDQVTQLSEMKANNSVEKSQEPTITEKDM
EKIVEEKTHIPVGELKAQEQAQLKNLAQDLEAHVIGQDTAVDKVARSIRRSRIGFNKSGRPIGSFLFVGPTGVGKTELAK
QIAKELFGSTDAMIRFDMSEYMEKFSVSKLIGSPPGYVGYEEAGQLTEQVRRNPYSLILLDEIEKAHPDVMHMFLQILDD
GRLTDSQGRTVSFKDTIIIMTSNAGQTDAEANVGFGAAVAGQTHSILDQLTNYFKPEFLNRFDDIIEFQPLSKDNLLKIV
SLMLDQTNAMIADQGLHIAVTDDAKSKLVDLGYNPEMGARPLRRVIQEQIEDRVADYYLDHPEHKQLKAQLNDDQIQIVQ
G
MLCQNCQKNPATIHLYTSVNGQNQAINLCQNCYQALKQQGMSGQYNDPFGFSNLDELFNAINNPNAERNAANQGPQTQGG
RNGGGNNGQNGESLLSQFGVNLTNLAKGGQIDPVIGRDKEIARVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQKIADG
DVPAKLKDRQVIRLDVVSLVQGTGIRGQFEERMQQLITELKQNKQIILFIDEIHEIVGAGNAEGGMDAGNVLKPALARGE
LQLVGATTNNEFRQIEKDAALARRLQPVAVNEPSVDETVLILKGLQDKYESYHHVHYTDEALKAAAALSSRYIQDRYLPD
KAIDLLDEAGSKKNLTIILMDPKELEAKIKSAEAQKQEALKQEDYEKAATYRDQVTQLSEMKANNSVEKSQEPTITEKDM
EKIVEEKTHIPVGELKAQEQAQLKNLAQDLEAHVIGQDTAVDKVARSIRRSRIGFNKSGRPIGSFLFVGPTGVGKTELAK
QIAKELFGSTDAMIRFDMSEYMEKFSVSKLIGSPPGYVGYEEAGQLTEQVRRNPYSLILLDEIEKAHPDVMHMFLQILDD
GRLTDSQGRTVSFKDTIIIMTSNAGQTDAEANVGFGAAVAGQTHSILDQLTNYFKPEFLNRFDDIIEFQPLSKDNLLKIV
SLMLDQTNAMIADQGLHIAVTDDAKSKLVDLGYNPEMGARPLRRVIQEQIEDRVADYYLDHPEHKQLKAQLNDDQIQIVQ
G
Nucleotide
Download Length: 2166 bp
>NTDB_id=167834 A4W88_RS07720 WP_076632333.1 1494830..1496995(+) (clpC) [Latilactobacillus sakei strain TMW 1.1398]
ATGCTTTGTCAAAATTGTCAAAAAAATCCAGCAACAATCCATCTCTACACTAGCGTCAATGGTCAAAACCAAGCCATTAA
CCTTTGTCAAAACTGTTATCAAGCACTAAAGCAACAAGGAATGAGTGGTCAATATAATGATCCCTTTGGTTTTAGTAATC
TTGATGAACTCTTCAATGCAATCAACAATCCAAACGCTGAACGCAATGCTGCTAACCAAGGCCCCCAAACACAAGGTGGC
CGTAATGGCGGCGGTAACAACGGTCAAAATGGTGAAAGTCTACTCAGCCAATTTGGTGTGAACCTCACCAACCTTGCTAA
GGGTGGTCAAATTGATCCGGTGATTGGTCGCGATAAGGAAATCGCGCGCGTCATCGAAATTCTCAATCGGCGTACCAAGA
ATAATCCAGTCTTAATTGGTGAAGCCGGCGTTGGTAAAACAGCCGTTGTCGAAGGTTTAGCGCAAAAAATTGCCGATGGC
GACGTTCCTGCTAAATTAAAGGATCGCCAAGTGATTCGCTTGGATGTCGTTTCATTAGTACAAGGGACTGGTATTCGCGG
TCAATTTGAAGAACGGATGCAACAGTTGATCACTGAGCTCAAACAAAATAAGCAGATTATCCTCTTTATTGATGAAATTC
ACGAAATCGTTGGCGCCGGCAATGCTGAAGGCGGCATGGATGCTGGTAACGTGTTGAAGCCAGCTCTTGCGCGTGGCGAA
TTACAACTCGTTGGCGCCACAACTAATAATGAATTCCGTCAGATTGAAAAAGACGCAGCCCTTGCACGTCGTCTTCAACC
GGTCGCGGTCAACGAACCATCTGTTGACGAAACCGTTCTAATTCTCAAAGGGCTTCAAGATAAATACGAAAGTTATCACC
ACGTTCACTATACGGACGAGGCGCTTAAAGCAGCAGCGGCCCTTTCTAGTCGTTATATCCAAGATCGTTATTTGCCTGAT
AAGGCTATCGACCTTTTGGATGAAGCAGGCTCTAAGAAAAACTTGACGATTATCTTGATGGATCCTAAGGAATTAGAAGC
CAAGATTAAATCTGCAGAAGCACAAAAACAAGAAGCCCTCAAACAAGAAGATTACGAAAAAGCAGCTACCTATCGTGATC
AAGTCACACAGCTCTCTGAAATGAAAGCTAATAATTCAGTTGAAAAATCCCAAGAACCAACAATCACCGAAAAGGATATG
GAAAAAATTGTCGAAGAAAAAACCCATATTCCAGTTGGCGAATTAAAGGCGCAAGAACAAGCTCAACTTAAAAACTTAGC
GCAAGATCTTGAAGCACATGTCATTGGTCAAGATACCGCAGTTGATAAAGTCGCTCGTTCAATTCGTCGTAGTCGAATTG
GCTTTAATAAATCCGGCCGACCAATTGGCTCCTTCCTCTTTGTTGGCCCAACCGGGGTTGGTAAAACGGAATTAGCCAAA
CAAATTGCCAAAGAACTCTTTGGCAGTACCGATGCGATGATTCGCTTTGATATGAGTGAATACATGGAGAAATTCAGTGT
GTCAAAATTGATTGGTTCACCTCCTGGCTACGTTGGTTACGAAGAAGCCGGGCAATTAACGGAACAAGTTCGTCGGAACC
CTTATAGTTTGATTCTTTTGGATGAAATCGAAAAGGCTCACCCTGACGTTATGCACATGTTCTTACAAATTCTAGATGAC
GGTCGTCTAACCGATTCACAAGGTCGGACTGTCAGCTTCAAAGACACAATCATTATCATGACGTCTAACGCTGGACAAAC
TGATGCTGAGGCTAACGTTGGTTTCGGTGCAGCTGTCGCTGGCCAAACCCATTCAATTCTCGATCAGTTAACGAACTACT
TTAAACCAGAATTCTTAAATCGTTTCGACGATATTATTGAATTCCAACCATTAAGTAAAGATAATCTATTAAAGATTGTC
AGCTTAATGCTTGATCAAACTAACGCGATGATTGCCGATCAAGGCCTCCACATTGCTGTGACGGATGACGCTAAATCTAA
ATTAGTCGATTTGGGCTACAACCCTGAAATGGGCGCTCGGCCACTACGTCGTGTCATTCAAGAACAAATTGAAGACCGCG
TTGCTGATTATTATTTAGATCATCCAGAACATAAGCAATTAAAAGCGCAGTTAAATGATGATCAGATTCAAATTGTGCAA
GGATAA
ATGCTTTGTCAAAATTGTCAAAAAAATCCAGCAACAATCCATCTCTACACTAGCGTCAATGGTCAAAACCAAGCCATTAA
CCTTTGTCAAAACTGTTATCAAGCACTAAAGCAACAAGGAATGAGTGGTCAATATAATGATCCCTTTGGTTTTAGTAATC
TTGATGAACTCTTCAATGCAATCAACAATCCAAACGCTGAACGCAATGCTGCTAACCAAGGCCCCCAAACACAAGGTGGC
CGTAATGGCGGCGGTAACAACGGTCAAAATGGTGAAAGTCTACTCAGCCAATTTGGTGTGAACCTCACCAACCTTGCTAA
GGGTGGTCAAATTGATCCGGTGATTGGTCGCGATAAGGAAATCGCGCGCGTCATCGAAATTCTCAATCGGCGTACCAAGA
ATAATCCAGTCTTAATTGGTGAAGCCGGCGTTGGTAAAACAGCCGTTGTCGAAGGTTTAGCGCAAAAAATTGCCGATGGC
GACGTTCCTGCTAAATTAAAGGATCGCCAAGTGATTCGCTTGGATGTCGTTTCATTAGTACAAGGGACTGGTATTCGCGG
TCAATTTGAAGAACGGATGCAACAGTTGATCACTGAGCTCAAACAAAATAAGCAGATTATCCTCTTTATTGATGAAATTC
ACGAAATCGTTGGCGCCGGCAATGCTGAAGGCGGCATGGATGCTGGTAACGTGTTGAAGCCAGCTCTTGCGCGTGGCGAA
TTACAACTCGTTGGCGCCACAACTAATAATGAATTCCGTCAGATTGAAAAAGACGCAGCCCTTGCACGTCGTCTTCAACC
GGTCGCGGTCAACGAACCATCTGTTGACGAAACCGTTCTAATTCTCAAAGGGCTTCAAGATAAATACGAAAGTTATCACC
ACGTTCACTATACGGACGAGGCGCTTAAAGCAGCAGCGGCCCTTTCTAGTCGTTATATCCAAGATCGTTATTTGCCTGAT
AAGGCTATCGACCTTTTGGATGAAGCAGGCTCTAAGAAAAACTTGACGATTATCTTGATGGATCCTAAGGAATTAGAAGC
CAAGATTAAATCTGCAGAAGCACAAAAACAAGAAGCCCTCAAACAAGAAGATTACGAAAAAGCAGCTACCTATCGTGATC
AAGTCACACAGCTCTCTGAAATGAAAGCTAATAATTCAGTTGAAAAATCCCAAGAACCAACAATCACCGAAAAGGATATG
GAAAAAATTGTCGAAGAAAAAACCCATATTCCAGTTGGCGAATTAAAGGCGCAAGAACAAGCTCAACTTAAAAACTTAGC
GCAAGATCTTGAAGCACATGTCATTGGTCAAGATACCGCAGTTGATAAAGTCGCTCGTTCAATTCGTCGTAGTCGAATTG
GCTTTAATAAATCCGGCCGACCAATTGGCTCCTTCCTCTTTGTTGGCCCAACCGGGGTTGGTAAAACGGAATTAGCCAAA
CAAATTGCCAAAGAACTCTTTGGCAGTACCGATGCGATGATTCGCTTTGATATGAGTGAATACATGGAGAAATTCAGTGT
GTCAAAATTGATTGGTTCACCTCCTGGCTACGTTGGTTACGAAGAAGCCGGGCAATTAACGGAACAAGTTCGTCGGAACC
CTTATAGTTTGATTCTTTTGGATGAAATCGAAAAGGCTCACCCTGACGTTATGCACATGTTCTTACAAATTCTAGATGAC
GGTCGTCTAACCGATTCACAAGGTCGGACTGTCAGCTTCAAAGACACAATCATTATCATGACGTCTAACGCTGGACAAAC
TGATGCTGAGGCTAACGTTGGTTTCGGTGCAGCTGTCGCTGGCCAAACCCATTCAATTCTCGATCAGTTAACGAACTACT
TTAAACCAGAATTCTTAAATCGTTTCGACGATATTATTGAATTCCAACCATTAAGTAAAGATAATCTATTAAAGATTGTC
AGCTTAATGCTTGATCAAACTAACGCGATGATTGCCGATCAAGGCCTCCACATTGCTGTGACGGATGACGCTAAATCTAA
ATTAGTCGATTTGGGCTACAACCCTGAAATGGGCGCTCGGCCACTACGTCGTGTCATTCAAGAACAAATTGAAGACCGCG
TTGCTGATTATTATTTAGATCATCCAGAACATAAGCAATTAAAAGCGCAGTTAAATGATGATCAGATTCAAATTGTGCAA
GGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
67.852 |
100 |
0.688 |
| clpE | Streptococcus mutans UA159 |
66.712 |
100 |
0.678 |
| clpE | Streptococcus pneumoniae TIGR4 |
64.082 |
100 |
0.653 |
| clpE | Streptococcus pneumoniae Rx1 |
64.082 |
100 |
0.653 |
| clpE | Streptococcus pneumoniae D39 |
64.082 |
100 |
0.653 |
| clpE | Streptococcus pneumoniae R6 |
64.082 |
100 |
0.653 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
51.351 |
92.372 |
0.474 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.872 |
90.707 |
0.416 |
| clpC | Streptococcus thermophilus LMD-9 |
45.917 |
90.014 |
0.413 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.173 |
85.853 |
0.405 |
| clpC | Streptococcus pneumoniae Rx1 |
47.231 |
85.16 |
0.402 |
| clpC | Streptococcus pneumoniae D39 |
47.231 |
85.16 |
0.402 |
| clpC | Streptococcus pneumoniae TIGR4 |
47.068 |
85.16 |
0.401 |
| clpC | Streptococcus mutans UA159 |
46.58 |
85.16 |
0.397 |