Detailed information NTG0167834

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AL541_RS12890
• Genome accession: NZ_CP014040
• Coordinates: 2585840..2586826 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain FDAARGOS_110
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2580840..2591826

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL541_RS12875 (AL541_21245)	recA	2581385..2582428 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
AL541_RS12880 (AL541_21250)	pncC	2582629..2583111 (-)	483	WP_005380875.1	nicotinamide-nucleotide amidase	-
AL541_RS12885 (AL541_21255)	mutS	2583196..2585757 (+)	2562	WP_104979687.1	DNA mismatch repair protein MutS	-
AL541_RS12890 (AL541_21260)	rpoS	2585840..2586826 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
AL541_RS12895 (AL541_21265)	-	2586907..2587830 (-)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
AL541_RS12900 (AL541_21270)	-	2587844..2588470 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AL541_RS12905 (AL541_21275)	surE	2588470..2589246 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
AL541_RS12910 (AL541_21280)	truD	2589246..2590289 (-)	1044	WP_104979689.1	tRNA pseudouridine(13) synthase TruD	-
AL541_RS12915 (AL541_21285)	ispF	2590335..2590811 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AL541_RS12920 (AL541_21290)	ispD	2590826..2591533 (-)	708	WP_017633548.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AL541_RS12925 (AL541_21295)	ftsB	2591535..2591816 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=167834 AL541_RS12890 WP_005380887.1 2585840..2586826(-) (rpoS) [Vibrio alginolyticus strain FDAARGOS_110]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=167834 AL541_RS12890 WP_005380887.1 2585840..2586826(-) (rpoS) [Vibrio alginolyticus strain FDAARGOS_110]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTTGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACGTGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCATGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGACGCTTCGGCCTACTAGGCTATGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854