Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AL541_RS06365 Genome accession   NZ_CP014040
Coordinates   1368244..1369770 (-) Length   508 a.a.
NCBI ID   WP_104979164.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FDAARGOS_110     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1363244..1374770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL541_RS06345 (AL541_14720) - 1363263..1364693 (-) 1431 WP_017820656.1 lipopolysaccharide biosynthesis protein -
  AL541_RS06350 (AL541_14725) - 1364686..1365858 (-) 1173 WP_104979163.1 glycosyltransferase -
  AL541_RS06355 (AL541_14730) - 1365870..1367054 (-) 1185 WP_086046751.1 glycosyltransferase -
  AL541_RS06360 (AL541_14735) - 1367199..1368269 (-) 1071 WP_053303084.1 glycosyltransferase family 4 protein -
  AL541_RS06365 (AL541_14740) luxO 1368244..1369770 (-) 1527 WP_104979164.1 sigma-54 dependent transcriptional regulator Regulator
  AL541_RS06370 (AL541_14745) - 1370080..1370460 (-) 381 WP_005377636.1 Hpt domain-containing protein -
  AL541_RS06375 (AL541_14750) - 1370472..1371158 (-) 687 WP_017820661.1 AAA family ATPase -
  AL541_RS06380 (AL541_14755) - 1371158..1373260 (-) 2103 WP_104979166.1 SLBB domain-containing protein -
  AL541_RS06385 (AL541_14760) - 1373257..1374123 (-) 867 WP_017634930.1 OmpA family protein -
  AL541_RS06390 (AL541_14765) - 1374150..1374470 (-) 321 WP_017634929.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56597.46 Da        Isoelectric Point: 5.9083

>NTDB_id=167823 AL541_RS06365 WP_104979164.1 1368244..1369770(-) (luxO) [Vibrio alginolyticus strain FDAARGOS_110]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVSHLPAQLTKKSKVTKTTTPA
HVAQESANIAPITPPPGYTEEPSPSAVEPSITAAEQPSTPPSAATSPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=167823 AL541_RS06365 WP_104979164.1 1368244..1369770(-) (luxO) [Vibrio alginolyticus strain FDAARGOS_110]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTGAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGAAGCGATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGTTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCACACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACATCAGTCGCATTGCACCTCAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAGTCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGCCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTGTTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCCGTCCACCGCCAGAG
CGACCGTAAAGACAAGCCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGTACGCTTTTTCTT
GATGAGCTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGTTTTCTACAAACGGGCACTTACACCCCTCTTGG
TGGCACTCGAGAAATGAAAGTAGATGTGAGAATCATTTGTGCCACTAACCGAGATCCATTAACAGAGGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATCGATATGCCCCCATTACGTGAACGAGGAAGTGACATT
GTCACGCTTGCCAAGCACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ACGACGAAAAAGTCACGGTGAGCCACCTACCCGCTCAACTTACTAAAAAGTCTAAAGTGACGAAAACAACGACGCCTGCG
CATGTTGCTCAAGAGTCAGCAAACATTGCACCAATCACACCACCACCTGGTTATACTGAGGAACCTTCACCTTCTGCGGT
CGAACCGTCGATTACCGCAGCGGAGCAACCTAGTACACCTCCCTCTGCTGCTACCTCACCGTACTTTAACTCTGATGGAA
CCATTCGCCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAAAACGCAATTGCGTACTGTGATGGCAACGTCCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.047

0.484

Multiple sequence alignment