Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AL541_RS05145 Genome accession   NZ_CP014040
Coordinates   1077904..1079325 (-) Length   473 a.a.
NCBI ID   WP_053306939.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FDAARGOS_110     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1072904..1084325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL541_RS05120 (AL541_13495) - 1073434..1074084 (+) 651 WP_021707633.1 thiopurine S-methyltransferase -
  AL541_RS05125 (AL541_13500) purT 1074157..1075332 (-) 1176 WP_054866055.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  AL541_RS05130 (AL541_13505) cdd 1075476..1076363 (-) 888 WP_005377892.1 cytidine deaminase -
  AL541_RS05135 (AL541_13510) - 1076795..1077472 (-) 678 WP_005377888.1 LrgB family protein -
  AL541_RS05140 (AL541_13515) - 1077474..1077848 (-) 375 WP_005397786.1 CidA/LrgA family protein -
  AL541_RS05145 (AL541_13520) sbcB 1077904..1079325 (-) 1422 WP_053306939.1 exodeoxyribonuclease I Machinery gene
  AL541_RS05150 (AL541_13525) - 1079483..1080856 (-) 1374 WP_005377885.1 L-cystine transporter -
  AL541_RS05155 (AL541_13530) - 1081057..1081746 (-) 690 WP_005377884.1 NAD(P)H-binding protein -
  AL541_RS05160 (AL541_13535) cobT 1081995..1083038 (+) 1044 WP_104979038.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  AL541_RS05165 (AL541_13540) - 1083038..1083844 (+) 807 WP_053306937.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54529.71 Da        Isoelectric Point: 4.8214

>NTDB_id=167822 AL541_RS05145 WP_053306939.1 1077904..1079325(-) (sbcB) [Vibrio alginolyticus strain FDAARGOS_110]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHTELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=167822 AL541_RS05145 WP_053306939.1 1077904..1079325(-) (sbcB) [Vibrio alginolyticus strain FDAARGOS_110]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACACTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGATTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGTCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCTGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGACGGATTCTTCTCTCCGGCCG
ATCGCGCAGCCATGGATATCATTCGAGAAACCGACCCGAACAATCTTGCCGCATTGGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCATT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.07

100

0.791

Multiple sequence alignment