Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AL541_RS00065 Genome accession   NZ_CP014040
Coordinates   10197..11204 (-) Length   335 a.a.
NCBI ID   WP_005379543.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FDAARGOS_110     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5197..16204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL541_RS00045 (AL541_08420) - 5524..6441 (-) 918 WP_053306841.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  AL541_RS00050 (AL541_08425) hslU 7401..8732 (-) 1332 WP_053303349.1 HslU--HslV peptidase ATPase subunit -
  AL541_RS00055 (AL541_08430) hslV 8756..9307 (-) 552 WP_005379541.1 ATP-dependent protease subunit HslV -
  AL541_RS00060 (AL541_08435) ftsN 9423..9971 (-) 549 WP_104978729.1 cell division protein FtsN -
  AL541_RS00065 (AL541_08440) cytR 10197..11204 (-) 1008 WP_005379543.1 DNA-binding transcriptional regulator CytR Regulator
  AL541_RS00070 (AL541_08445) priA 11529..13733 (-) 2205 WP_104978730.1 primosomal protein N' -
  AL541_RS00080 (AL541_08455) rpmE 14030..14251 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  AL541_RS00085 (AL541_08460) rpsJ 14708..15019 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  AL541_RS00090 (AL541_08465) rplC 15034..15663 (+) 630 WP_005379555.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36892.42 Da        Isoelectric Point: 6.2447

>NTDB_id=167812 AL541_RS00065 WP_005379543.1 10197..11204(-) (cytR) [Vibrio alginolyticus strain FDAARGOS_110]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=167812 AL541_RS00065 WP_005379543.1 10197..11204(-) (cytR) [Vibrio alginolyticus strain FDAARGOS_110]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
AGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGTTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCTGAACTCGAGCTTCCGACAGTACATATTGATAAC
CTGACCTCTGCATTTGAAGCGGTGAATTACCTGACCCAATTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCACAATATA
GTGTCATTACTGAGTTTTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAACCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAACCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.521

99.701

0.893

Multiple sequence alignment