Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   AL538_RS24375 Genome accession   NZ_CP014039
Coordinates   1367455..1368636 (-) Length   393 a.a.
NCBI ID   WP_026000191.1    Uniprot ID   A0A1E3E250
Organism   Vibrio harveyi strain FDAARGOS_107     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1362455..1373636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL538_RS24360 (AL538_23260) - 1363749..1364297 (+) 549 WP_005447141.1 GNAT family N-acetyltransferase -
  AL538_RS24365 (AL538_23265) - 1364372..1364989 (-) 618 WP_017188910.1 HAD family hydrolase -
  AL538_RS24370 (AL538_23270) - 1365276..1367321 (+) 2046 WP_017819191.1 hybrid sensor histidine kinase/response regulator -
  AL538_RS24375 (AL538_23275) cqsA 1367455..1368636 (-) 1182 WP_026000191.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  AL538_RS24380 (AL538_23280) ylqF 1369171..1370115 (-) 945 WP_061066328.1 ribosome biogenesis GTPase YlqF -
  AL538_RS24385 (AL538_23285) - 1370437..1371423 (-) 987 WP_061066329.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43694.80 Da        Isoelectric Point: 6.4464

>NTDB_id=167810 AL538_RS24375 WP_026000191.1 1367455..1368636(-) (cqsA) [Vibrio harveyi strain FDAARGOS_107]
MSDKLKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPQSGAVVMQSNDYLSLSHNQLIQKAHRDAITEHDDNVVMS
AIFLQDDTSKPAFETQLADYVGMGSCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGAHAHAFMHNNMN
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGAGLVKALGLTDQVDFITVSLAK
TFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKGADDKRTLLFNRAKELRTGLKQIGFNIRSESQ
IVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDVDHVLTACQEAFNHPELEFA

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=167810 AL538_RS24375 WP_026000191.1 1367455..1368636(-) (cqsA) [Vibrio harveyi strain FDAARGOS_107]
ATGAGTGATAAACTGAAAACGAAACCTCTTCCTTCTTTTGTTGAGGAACGCCTAGACTTTTATATTCAAGACTTGATCGA
ACAAAACGAGAACCAGAAGCACTTGGTTTTAGGTAAGCGACCACAATCCGGAGCGGTGGTCATGCAAAGCAACGACTATT
TATCGTTATCCCACAACCAACTGATTCAAAAGGCACATCGTGATGCAATTACCGAGCATGACGACAACGTAGTAATGTCT
GCAATCTTCCTGCAAGATGATACTTCCAAGCCAGCATTTGAAACCCAACTCGCCGATTACGTGGGAATGGGAAGCTGCTT
GCTCTCACAATCAGGATGGGCGGCAAACATCGGGTTGTTGCAAACGATTTGCCCACCAAATACGCCCGTCTATATCGACT
TTTTTGCGCATATGTCGTTATGGGAAGGTATTCGAGCAGCGGGAGCACACGCGCATGCATTTATGCACAACAATATGAAC
CACTTGCGTAAACAGATCCAACGTCATGGCTCCGGTGTGATTGTTGTCGATTCAGTCTATAGCACGATTGGTACCATCGC
CCCACTTCACGACATCTACGAAATGGCACGTGAATTTGATTGTGCATTGGTCGTCGATGAATCCCACTCACTTGGAACTC
ACGGTCCAAATGGCGCGGGTCTTGTAAAAGCGTTGGGGTTAACCGATCAAGTTGATTTCATTACGGTAAGTTTGGCTAAG
ACATTCGCATACCGTGCGGGGGCTATTCTTGGTCCTGAAAAGCTAGCTAAGACACTCCCATTTGTCGCGTATCCAGCGAT
TTTTAGCTCGACGGTATTGCCGCAAGAAGTGATTCGCTTAGAAAAAACGCTTGAGGTGATTAAGGGGGCTGACGATAAAC
GAACCTTACTGTTCAACCGAGCTAAAGAGCTAAGAACAGGATTAAAACAAATTGGCTTTAATATCCGTAGTGAATCTCAA
ATTGTCGCTTTGGAGTGCGGTAGCGAGAGAAATACGGAACGTGTACGTGACTTTCTTGAAGAACGTAATGTGTTTGGTGC
AGTATTCTGTCGCCCAGCAACAGGTAAGAACAAAAACATCATCCGATTTTCAATCAATGCAGATATGACTTCTCGCGATG
TGGACCACGTACTTACCGCTTGTCAGGAAGCATTTAACCATCCAGAACTAGAATTCGCATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3E250

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567

Multiple sequence alignment