Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   A4W88_RS05420 Genome accession   NZ_CP017275
Coordinates   1048043..1049488 (-) Length   481 a.a.
NCBI ID   WP_076632483.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1398     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1043043..1054488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W88_RS05395 (A4W88_05365) - 1043215..1043490 (-) 276 WP_011374717.1 HU family DNA-binding protein -
  A4W88_RS05400 (A4W88_05370) der 1043697..1045007 (-) 1311 WP_076632485.1 ribosome biogenesis GTPase Der -
  A4W88_RS05405 (A4W88_05375) rpsA 1045241..1046452 (-) 1212 WP_025015758.1 30S ribosomal protein S1 -
  A4W88_RS05410 (A4W88_05380) cmk 1046547..1047206 (-) 660 WP_011374720.1 (d)CMP kinase -
  A4W88_RS05415 (A4W88_05385) - 1047273..1047974 (-) 702 WP_076632484.1 LysM domain-containing protein -
  A4W88_RS05420 (A4W88_05390) recS 1048043..1049488 (-) 1446 WP_076632483.1 RecQ family ATP-dependent DNA helicase Machinery gene
  A4W88_RS05425 (A4W88_05395) - 1049485..1050513 (-) 1029 WP_011374723.1 helix-turn-helix domain-containing protein -
  A4W88_RS05430 (A4W88_05400) - 1050550..1050780 (+) 231 WP_011374724.1 ferredoxin -
  A4W88_RS05435 (A4W88_05405) - 1050858..1051433 (-) 576 WP_056946643.1 ECF transporter S component -
  A4W88_RS05440 (A4W88_05410) - 1051748..1052518 (-) 771 WP_011374726.1 pseudouridine synthase -
  A4W88_RS05445 (A4W88_05415) scpB 1052521..1053144 (-) 624 WP_011374727.1 SMC-Scp complex subunit ScpB -
  A4W88_RS05450 (A4W88_05420) - 1053128..1053883 (-) 756 WP_056946646.1 segregation/condensation protein A -
  A4W88_RS05455 (A4W88_05425) - 1053892..1054260 (-) 369 WP_011374729.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 54442.25 Da        Isoelectric Point: 5.6621

>NTDB_id=167805 A4W88_RS05420 WP_076632483.1 1048043..1049488(-) (recS) [Latilactobacillus sakei strain TMW 1.1398]
MTSEQLIYDQLAQHFGYSTFKPGQLAVIKSVLAGQETLAVLPTGTGKSLCYQLPAYILGHTTVIVSPLIALMQDQVAQLN
YQGEKRAVAINSNLVPQQKYQLLTHLADYRFIFMAPETISQREVIQALQRCQIDLFVVDEAHCISQWGIDFRPDYLVLAA
IKAQLQPTATLALTATANDRVRQDILNKLALKNAAQIMTSVDRPNIYLGVSQQPDEQAKNQFLANLVKKSQGPGIIYFSS
RQKTMAIATFLQQETDLKIAYYHAALSTQERYLIQQQFMQGQLDLICTTNAFGMGINKADIRFVIHYHLPQNIESYLQEI
GRAGRDGQAAYALVLTTPQDLYLQQSLVSFGIPEPGLIRRYYQEPQLFKQSQGSEFELLRRYQQLGMTEEEVTALLDNRQ
TEKQFSLQTMLDYLTLKGCRRQFIVNYFDQAPKTIEHSETCCGEQDSTDFLAQLDLEQAINYKTAETVVLTGWTGILDQL
F

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=167805 A4W88_RS05420 WP_076632483.1 1048043..1049488(-) (recS) [Latilactobacillus sakei strain TMW 1.1398]
ATGACTTCTGAACAACTCATTTATGACCAGTTAGCGCAGCACTTTGGCTATTCAACCTTTAAACCGGGCCAGTTAGCGGT
TATTAAGTCGGTACTTGCTGGGCAGGAGACATTAGCCGTTTTACCAACTGGGACCGGGAAATCGCTGTGTTATCAATTAC
CGGCCTATATCTTGGGGCATACGACTGTGATTGTCTCGCCACTAATCGCATTAATGCAAGATCAGGTCGCCCAATTGAAT
TATCAAGGGGAAAAACGAGCTGTCGCCATTAATTCTAATTTAGTGCCTCAGCAAAAATACCAGTTACTGACGCATTTAGC
GGATTACCGCTTTATTTTTATGGCACCGGAGACTATCAGTCAACGAGAAGTGATTCAGGCGCTTCAACGTTGTCAAATCG
ATTTGTTTGTGGTTGATGAGGCCCATTGTATTTCACAGTGGGGAATTGACTTTAGACCGGACTATTTAGTTTTAGCAGCC
ATTAAGGCCCAATTACAGCCAACTGCAACACTGGCTTTGACGGCGACTGCCAATGATCGTGTACGCCAAGATATTTTGAA
TAAGTTGGCGTTAAAAAACGCGGCCCAAATCATGACCTCTGTTGATCGCCCCAATATCTATTTGGGCGTGAGCCAACAAC
CTGATGAACAAGCGAAGAACCAATTTTTAGCCAACTTAGTGAAAAAAAGCCAGGGTCCCGGGATTATTTATTTTTCAAGT
CGGCAAAAGACAATGGCGATTGCAACCTTTTTACAACAGGAGACTGATCTAAAAATTGCTTATTACCACGCAGCGTTATC
AACCCAGGAGCGGTATTTAATTCAACAACAATTTATGCAAGGACAACTCGATTTAATTTGTACCACCAATGCTTTTGGGA
TGGGGATTAACAAAGCGGATATTCGCTTTGTGATTCATTATCACTTGCCACAAAATATCGAAAGTTATCTACAAGAAATT
GGACGAGCAGGTCGAGATGGGCAAGCAGCGTATGCTTTAGTCCTAACAACCCCGCAAGATTTATATTTACAACAATCACT
CGTATCATTTGGGATTCCGGAACCCGGACTCATTCGGCGCTATTATCAGGAACCGCAATTATTTAAACAAAGTCAAGGCA
GTGAATTTGAACTGTTGCGTCGTTACCAACAACTGGGGATGACCGAAGAAGAGGTGACTGCCTTATTGGATAATCGCCAA
ACTGAAAAACAATTTTCATTACAAACAATGTTGGATTATTTGACGCTCAAGGGCTGCCGGCGTCAATTTATTGTGAACTA
TTTTGACCAGGCACCAAAGACGATTGAACACAGCGAAACGTGTTGCGGGGAACAGGATTCGACCGACTTTTTAGCACAAT
TAGACTTAGAACAGGCTATTAATTATAAAACCGCTGAAACCGTTGTTCTGACTGGTTGGACGGGAATCTTGGACCAATTA
TTTTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(219-326)

DEAD/DEAH box helicase (DEAD)

(22-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

40.929

93.971

0.385

Multiple sequence alignment