Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   A4W88_RS03445 Genome accession   NZ_CP017275
Coordinates   669542..671245 (+) Length   567 a.a.
NCBI ID   WP_056948329.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1398     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 664542..676245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W88_RS03415 (A4W88_03385) folD 664821..665675 (+) 855 WP_162256146.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  A4W88_RS03420 (A4W88_03390) xseA 665668..667017 (+) 1350 WP_056948323.1 exodeoxyribonuclease VII large subunit -
  A4W88_RS03425 (A4W88_03395) - 667019..667249 (+) 231 WP_011374387.1 exodeoxyribonuclease VII small subunit -
  A4W88_RS03430 (A4W88_03400) - 667249..668121 (+) 873 WP_056948325.1 polyprenyl synthetase family protein -
  A4W88_RS03435 (A4W88_03405) - 668130..668960 (+) 831 WP_056948327.1 TlyA family RNA methyltransferase -
  A4W88_RS03440 (A4W88_03410) argR 669040..669492 (+) 453 WP_025015872.1 arginine repressor -
  A4W88_RS03445 (A4W88_03415) recN 669542..671245 (+) 1704 WP_056948329.1 DNA repair protein RecN Machinery gene
  A4W88_RS03450 (A4W88_03420) - 671304..671627 (-) 324 WP_056948330.1 hypothetical protein -
  A4W88_RS03455 (A4W88_03425) - 671750..671974 (+) 225 WP_076632161.1 PC4/YdbC family ssDNA-binding protein -
  A4W88_RS03460 (A4W88_03430) gmk 672047..672658 (+) 612 WP_076632160.1 guanylate kinase -
  A4W88_RS03465 (A4W88_03435) rpoZ 672663..672920 (+) 258 WP_011374395.1 DNA-directed RNA polymerase subunit omega -
  A4W88_RS03470 (A4W88_03440) coaBC 673009..674226 (+) 1218 WP_011374396.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 63180.18 Da        Isoelectric Point: 4.7021

>NTDB_id=167788 A4W88_RS03445 WP_056948329.1 669542..671245(+) (recN) [Latilactobacillus sakei strain TMW 1.1398]
MLQELVIHDFAIIDQLAISFDEGMTVLSGETGAGKSIIIDAVGLLAGGRGSQDFIRTGAKKATLEGLFTSPENATTAALL
AEYGIEHDDQTILLQRDLALNGHNVCRVNGHLVNTATLKKIGETLVDIHGQNEHQELMYPDRHLGLLDEFAHTALASAKA
AYQETYQAYRQTEKALKKKQQNEQEWAQRLDMLKFQTNEIDAAQLQPDEESKLIEERAKLSNFQRINQALQASRAILSGE
EGNALDQIAIAMNQMQEIAELDPEFKRIADNLQTGYYTLQDSGSDISREVDNLEWDEARLDEIEQRLETINNLEHKYGDS
IPEILAYGAQITKELQAMQATEANASELEQQFEQQQAQLLEEAAVLSEKRQAAAQQLEKAVHQQLKALYMAKTVFKVEFA
MVDNQQFMRSGRDKVEFYIQPNPGEKLRPLAKTASGGELSRLMLALKTIFSESQGVTSIIFDEVDTGVSGRVAQAIANKI
SEIAQHSQVLCITHLPQVAAMSDHQYQIQKQIKQNRTETSIQKVTGKKRVAELARMLAGTEVTELTLEHAQELVDLAETA
KAQIRQA

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=167788 A4W88_RS03445 WP_056948329.1 669542..671245(+) (recN) [Latilactobacillus sakei strain TMW 1.1398]
ATGCTACAAGAATTAGTCATTCACGACTTTGCAATTATAGATCAATTGGCCATTAGTTTCGATGAAGGGATGACGGTTCT
TTCTGGTGAAACAGGGGCCGGGAAATCGATTATTATCGACGCGGTTGGCCTGCTCGCTGGTGGTCGAGGGTCACAGGATT
TTATCCGAACCGGTGCGAAAAAAGCGACGTTAGAGGGCTTGTTTACATCACCCGAAAACGCCACGACTGCCGCGCTTTTA
GCTGAATATGGGATTGAACACGATGATCAAACCATTTTATTACAACGTGATTTGGCATTAAACGGGCATAATGTTTGCCG
TGTTAATGGCCATCTGGTCAACACTGCGACGCTTAAAAAGATTGGAGAAACATTAGTTGATATTCACGGTCAAAACGAAC
ATCAAGAATTAATGTATCCTGATCGCCATCTAGGCTTGTTGGATGAGTTTGCCCACACAGCTTTGGCGAGTGCAAAGGCG
GCCTATCAAGAAACCTATCAGGCTTACCGGCAAACGGAAAAAGCATTGAAGAAGAAGCAACAAAATGAGCAGGAATGGGC
CCAACGCCTTGATATGCTTAAATTTCAAACTAATGAAATTGACGCAGCGCAATTACAACCAGATGAAGAAAGTAAGTTAA
TCGAAGAACGCGCGAAACTCAGCAACTTCCAACGAATTAATCAGGCCTTGCAAGCTAGTCGCGCCATTTTATCTGGTGAA
GAAGGCAACGCGCTAGATCAAATCGCGATTGCGATGAATCAGATGCAAGAAATTGCGGAATTAGATCCTGAATTCAAAAG
AATTGCTGATAATCTACAAACAGGCTATTACACACTGCAAGACAGCGGTAGTGATATTAGTCGGGAAGTCGATAATCTTG
AATGGGACGAAGCACGCTTGGATGAAATTGAACAGCGCTTAGAAACAATCAATAATCTCGAACATAAATATGGCGATTCA
ATTCCTGAAATCTTAGCTTATGGGGCGCAAATTACCAAAGAATTGCAAGCAATGCAGGCCACCGAAGCCAATGCAAGCGA
ATTAGAGCAACAATTTGAACAACAACAAGCCCAATTGCTGGAAGAAGCAGCCGTTCTTTCTGAGAAACGCCAAGCTGCTG
CTCAACAGTTGGAAAAGGCTGTTCACCAACAACTCAAAGCGCTCTACATGGCTAAAACGGTTTTCAAAGTTGAATTTGCC
ATGGTTGATAATCAGCAATTTATGCGCAGCGGTCGGGATAAAGTTGAATTTTATATTCAACCTAATCCGGGTGAGAAGCT
ACGGCCGCTTGCCAAGACTGCTTCTGGTGGGGAATTATCCCGATTGATGTTGGCGCTTAAAACGATTTTCTCAGAATCAC
AAGGCGTTACCAGCATTATTTTCGATGAAGTTGATACTGGGGTCAGTGGGCGTGTTGCACAGGCAATCGCCAATAAAATT
AGCGAAATTGCCCAACATTCACAAGTCCTCTGTATTACGCATTTGCCACAAGTAGCGGCGATGAGTGATCATCAATACCA
AATTCAAAAACAAATTAAACAAAACCGCACAGAAACATCAATCCAAAAGGTAACCGGTAAAAAACGCGTTGCTGAACTGG
CTCGTATGTTGGCGGGGACAGAAGTGACGGAATTAACGCTAGAACACGCCCAAGAATTAGTGGACCTCGCAGAAACTGCT
AAAGCACAGATTAGACAAGCTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

45.819

100

0.464