Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AL538_RS07150 Genome accession   NZ_CP014038
Coordinates   1407433..1407951 (-) Length   172 a.a.
NCBI ID   WP_005448429.1    Uniprot ID   A0A9X3RVD3
Organism   Vibrio harveyi strain FDAARGOS_107     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1402433..1412951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL538_RS07125 (AL538_06550) rimM 1402485..1403033 (-) 549 WP_005446245.1 ribosome maturation factor RimM -
  AL538_RS07130 (AL538_06555) rpsP 1403062..1403310 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  AL538_RS07135 (AL538_06560) ffh 1403521..1404903 (-) 1383 WP_005446242.1 signal recognition particle protein -
  AL538_RS07140 (AL538_06565) - 1405117..1405911 (+) 795 WP_005446240.1 cytochrome C assembly family protein -
  AL538_RS07145 (AL538_06570) - 1406066..1407340 (+) 1275 WP_005446238.1 HlyC/CorC family transporter -
  AL538_RS07150 (AL538_06575) luxS 1407433..1407951 (-) 519 WP_005448429.1 S-ribosylhomocysteine lyase Regulator
  AL538_RS07155 (AL538_06580) - 1408037..1408600 (-) 564 WP_005448430.1 hypothetical protein -
  AL538_RS07160 (AL538_06585) gshA 1408662..1410230 (-) 1569 WP_061065381.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19054.80 Da        Isoelectric Point: 4.8563

>NTDB_id=167773 AL538_RS07150 WP_005448429.1 1407433..1407951(-) (luxS) [Vibrio harveyi strain FDAARGOS_107]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=167773 AL538_RS07150 WP_005448429.1 1407433..1407951(-) (luxS) [Vibrio harveyi strain FDAARGOS_107]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTTTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855

Multiple sequence alignment