Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AL538_RS04640 Genome accession   NZ_CP014038
Coordinates   860591..861994 (-) Length   467 a.a.
NCBI ID   WP_005444697.1    Uniprot ID   -
Organism   Vibrio harveyi strain FDAARGOS_107     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 855591..866994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL538_RS04605 (AL538_04090) moaE 856124..856579 (-) 456 WP_009702831.1 molybdopterin synthase catalytic subunit MoaE -
  AL538_RS04610 (AL538_04095) moaD 856581..856838 (-) 258 WP_005444716.1 molybdopterin synthase sulfur carrier subunit -
  AL538_RS04615 (AL538_04100) moaC 856838..857314 (-) 477 WP_050908866.1 cyclic pyranopterin monophosphate synthase MoaC -
  AL538_RS04620 (AL538_04105) moaB 857341..857853 (-) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  AL538_RS04625 (AL538_04110) moaA 857955..858944 (-) 990 WP_005444703.1 GTP 3',8-cyclase MoaA -
  AL538_RS04630 (AL538_04115) - 859242..860135 (+) 894 WP_005444701.1 YvcK family protein -
  AL538_RS04635 (AL538_04120) luxU 860250..860594 (-) 345 WP_005444699.1 quorum-sensing phosphorelay protein LuxU -
  AL538_RS04640 (AL538_04125) luxO 860591..861994 (-) 1404 WP_005444697.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AL538_RS04645 (AL538_04130) uvrB 862320..864350 (-) 2031 WP_005444695.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52150.57 Da        Isoelectric Point: 5.8838

>NTDB_id=167767 AL538_RS04640 WP_005444697.1 860591..861994(-) (luxO) [Vibrio harveyi strain FDAARGOS_107]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
ASKFIEPDILTVSDIMPLWMTEKMAIEQAIQACDGNIPRAAGYLDVSPSTIYRKLQAWNSRDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=167767 AL538_RS04640 WP_005444697.1 860591..861994(-) (luxO) [Vibrio harveyi strain FDAARGOS_107]
ATGCAACAAATAACAGAAGGTCAAAAGTCTCGTTATCTACTAATGGTAGAAGACACCGCATCTGTCGCGGCATTGTACCG
TTCTTACCTAACGCCACTCGGCATCGATATCAATATTGTTGGTACAGGCAGAGACGCAATCGAAAGTCTGAACCACCGTA
TTCCTGATCTTATTCTGCTCGATCTTCGTCTACCTGATATGACGGGGATGGATGTATTGCACGCAGTGAAGAAAAGTCAT
CCAGACGTGCCAATTATCTTTATGACTGCCCATGGCTCTATCGATACTGCGGTAGAAGCAATGCGTCATGGTTCTCAAGA
TTTCTTAATTAAACCATGTGAAGCTGACCGTTTACGCGTCACGGTAAATAATGCGATCCGTAAAGCTACCAAGCTTAAAA
ATGAAGCGGATAATCCGGGCAACCAAAATTACCAAGGCTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGCACT
ATTGACTCGGCGGCGAGCAGTAAAGCAAGTATTTTCATCACGGGTGAAAGTGGTACTGGTAAAGAGGTGTGTGCCGAGGC
AATTCACGCAGCAAGCAAACGTGGTGATAAGCCGTTTATCGCCATTAACTGTGCTGCCATCCCTAAAGATCTGATTGAGA
GCGAGCTATTTGGTCACGTAAAAGGTGCATTTACTGGCGCGGCAAATGACCGACAAGGTGCGGCTGAGCTTGCTGACGGC
GGCACTTTGTTTCTTGATGAGCTTTGTGAGATGGACCTAGACCTCCAGACAAAGTTACTAAGATTCATTCAAACGGGGAC
GTTCCAAAAAGTCGGTTCTTCGAAGATGAAGAGTGTGGACGTACGTTTTGTTTGCGCAACGAACCGCGACCCTTGGAAGG
AAGTGCAAGAAGGGCGTTTTCGTGAAGACTTGTACTATCGTTTGTACGTGATCCCATTGCACCTTCCACCGCTGCGTGAG
CGTGGCGAAGATGTAATTGAGATTGCTTATTCGTTGCTTGGTTATATGTCTCACGAAGAAGGCAAAAGCTTCATCCGCTT
CTCGCAAGAGGTGATTGATAGGTTCAATAGTTATGAATGGCCGGGTAACGTTCGTCAGTTGCAAAACGTACTGCGCAACA
TTGTGGTATTGAACAACGGCAAAGAGATTACGTTAGACATGCTGCCACCGCCGTTGAACCAGCCAGTGGTTCGTCAATCG
GCATCAAAATTTATTGAACCTGACATTTTGACGGTGTCAGACATTATGCCGCTTTGGATGACTGAGAAAATGGCCATCGA
GCAGGCGATTCAAGCGTGTGATGGCAATATTCCACGCGCTGCGGGCTACTTAGATGTCAGCCCATCGACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAGGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.83

95.931

0.833

Multiple sequence alignment