Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   A4W87_RS09560 Genome accession   NZ_CP017273
Coordinates   1875443..1876318 (-) Length   291 a.a.
NCBI ID   WP_011373734.1    Uniprot ID   Q38ZQ8
Organism   Latilactobacillus sakei strain TMW 1.1396     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1870443..1881318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W87_RS09530 (A4W87_09485) nrdI 1871047..1871514 (+) 468 WP_172425599.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  A4W87_RS09535 (A4W87_09490) - 1871511..1872179 (-) 669 WP_011373739.1 HAD hydrolase-like protein -
  A4W87_RS09540 (A4W87_09495) - 1872559..1873323 (-) 765 WP_076631989.1 prolyl oligopeptidase family serine peptidase -
  A4W87_RS09545 (A4W87_09500) - 1873360..1874034 (-) 675 WP_076631988.1 DUF1129 domain-containing protein -
  A4W87_RS09550 (A4W87_09505) ychF 1874052..1875152 (-) 1101 WP_056946778.1 redox-regulated ATPase YchF -
  A4W87_RS09555 (A4W87_09510) - 1875176..1875424 (-) 249 WP_016264320.1 DUF951 domain-containing protein -
  A4W87_RS09560 (A4W87_09515) spo0J 1875443..1876318 (-) 876 WP_011373734.1 ParB/RepB/Spo0J family partition protein Regulator
  A4W87_RS09565 (A4W87_09520) - 1876308..1877075 (-) 768 WP_016264318.1 AAA family ATPase -
  A4W87_RS09570 (A4W87_09525) noc 1877087..1877986 (-) 900 WP_011373732.1 nucleoid occlusion protein -
  A4W87_RS09575 (A4W87_09530) rsmG 1877986..1878726 (-) 741 WP_011373731.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  A4W87_RS09580 (A4W87_09535) - 1879095..1880435 (+) 1341 WP_076631987.1 nucleobase:cation symporter-2 family protein -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32411.38 Da        Isoelectric Point: 9.8304

>NTDB_id=167758 A4W87_RS09560 WP_011373734.1 1875443..1876318(-) (spo0J) [Latilactobacillus sakei strain TMW 1.1396]
MVNKNGKGLGRGLEAVFSAFEGPNKNRADELVEELALEDIRPNPYQPRKTFDEAALAELAASIKKSGVFQPIIVRKSING
YELIAGERRFRASKLAGKTTIPAITRQFDEEAMMEIAVLENLQREDLTPLEEAQAYDTLLKKLNLTQAEVSERLGKSRPY
IANYLRLLGLPADVKQLLQEGQLSMGQARTLLSLKKKSQISALAKRTIAESLTVRQLEQLVNQMNQTKAAKVAKTKIKSP
YIQASENQLVDKFDTKVNIAMNSKGRGKIEIDYGTVEDLNRILALLDVNID

Nucleotide


Download         Length: 876 bp        

>NTDB_id=167758 A4W87_RS09560 WP_011373734.1 1875443..1876318(-) (spo0J) [Latilactobacillus sakei strain TMW 1.1396]
ATGGTCAATAAAAATGGTAAAGGACTCGGTCGAGGACTCGAAGCTGTTTTTTCAGCATTTGAGGGACCAAATAAGAATCG
TGCGGATGAACTCGTTGAAGAGCTTGCCCTCGAGGATATTCGTCCTAATCCTTATCAACCACGTAAAACGTTTGATGAAG
CGGCACTAGCGGAACTTGCTGCTTCCATTAAAAAATCAGGCGTTTTCCAACCGATTATTGTGCGTAAAAGCATTAATGGT
TACGAATTAATCGCTGGCGAACGTCGTTTCCGTGCTTCTAAATTAGCTGGCAAAACTACGATTCCAGCGATTACCCGTCA
ATTCGATGAAGAAGCGATGATGGAAATTGCAGTCTTAGAAAACCTTCAACGGGAAGATTTAACACCGCTAGAAGAAGCGC
AAGCCTACGACACCCTTTTGAAGAAGTTAAACTTAACGCAAGCTGAAGTGTCAGAACGCTTAGGCAAGAGTCGCCCTTAC
ATTGCCAACTACTTACGCCTGTTGGGCTTGCCAGCAGATGTTAAGCAATTGTTGCAAGAAGGCCAACTCTCAATGGGACA
AGCACGGACGCTTTTATCATTGAAGAAAAAGAGTCAAATTAGCGCCCTCGCCAAGCGGACGATTGCCGAAAGCCTAACGG
TGCGCCAATTAGAACAACTCGTCAACCAAATGAATCAAACCAAAGCGGCTAAAGTTGCTAAGACTAAGATTAAATCACCT
TACATTCAAGCGAGTGAAAACCAATTAGTCGATAAATTCGATACCAAGGTTAATATTGCGATGAACAGTAAGGGCCGGGG
TAAAATCGAAATTGATTACGGCACGGTAGAGGATTTAAACCGAATCTTGGCTTTACTAGATGTCAATATTGATTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(139-166)

ParB/Sulfiredoxin domain (ParB_N)

(34-121)

HTH domain found in ParB protein (HTH_ParB)

(173-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38ZQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

42.085

89.003

0.375